View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_low_14 (Length: 265)
Name: NF3705_low_14
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 35275682 - 35275423
Alignment:
| Q |
1 |
caagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgacct |
100 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||| |
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| T |
35275682 |
caagtcaaagtgcagcaaatagccaaatccctggaccatcttctgacctatcgacactcactagaatgtttcaaaacaaaagtctaacattaaatgacct |
35275583 |
T |
|
| Q |
101 |
tacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275582 |
tacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctacc |
35275483 |
T |
|
| Q |
201 |
ttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcaccctttgcttct |
260 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35275482 |
ttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcaccctttgattct |
35275423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 35289794 - 35289545
Alignment:
| Q |
1 |
caagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289794 |
caagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgacct |
35289695 |
T |
|
| Q |
101 |
tacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctacc |
200 |
Q |
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||| ||||| |||||||||||||||||||| ||| | || |||||||||||||||| ||| ||| |||| ||| |||||||||||| |||||| || ||| |
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| T |
35289694 |
tactgtcctttctggtgcacacaccataggtcaagcagaatgtcaatttttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaacc |
35289595 |
T |
|
| Q |
201 |
ttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcacc |
250 |
Q |
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||||||||| |||||| ||||| ||||||||||||| ||||| ||||| |
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| T |
35289594 |
ttaagaaaatcaaattgtcctacttctggtggtgacataaatttggcacc |
35289545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 35280449 - 35280241
Alignment:
| Q |
1 |
caagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgacct |
100 |
Q |
| |
|
||||||||||||||||||| | |||||| || |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |
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| T |
35280449 |
caagtcaaagtgcagcaaacacccaaatcccttcaccagcttctgacctatccacactcactaaaatgtttcaaaacaaaggtctaacattaagagacct |
35280350 |
T |
|
| Q |
101 |
tacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctacc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| | || |||||||||||| ||||||||||| |||||||| ||||||| |||| |||||| || ||| |
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| T |
35280349 |
tacagtcctttctggtgcacacaccataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaacc |
35280250 |
T |
|
| Q |
201 |
ttaagaaaa |
209 |
Q |
| |
|
||||||||| |
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|
| T |
35280249 |
ttaagaaaa |
35280241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 35307592 - 35307343
Alignment:
| Q |
1 |
caagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgacct |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||| ||||||||| ||||| |||||||| |||||| | ||| |||||||| || |||||| |
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| T |
35307592 |
caagccaaagtgcagcaaatagtcaaatcccttcaccattttctgacctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacct |
35307493 |
T |
|
| Q |
101 |
tacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctacc |
200 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| || ||| |
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| T |
35307492 |
cacagtactttctggtgcacacaccataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaacc |
35307393 |
T |
|
| Q |
201 |
ttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcacc |
250 |
Q |
| |
|
||||| ||| |||||| ||| |||||||||||||||||||||||||| |
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| T |
35307392 |
ttaaggaaatcaaattgtcctctttctggtggtgacaccaatttagcacc |
35307343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 35322593 - 35322344
Alignment:
| Q |
1 |
caagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgacct |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||| ||||||||| ||||| ||||| | ||||||| | |||| |||||||| || |||||| |
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|
| T |
35322593 |
caagccaaagtgcagcaaatagtcaaatcccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacct |
35322494 |
T |
|
| Q |
101 |
tacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctacc |
200 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| || ||| |
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| T |
35322493 |
cacagtactttctggtgcacacaccataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaacc |
35322394 |
T |
|
| Q |
201 |
ttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcacc |
250 |
Q |
| |
|
||||| ||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
35322393 |
ttaaggaaattaaattgtcctctttctggtggtgacaccaatttagcacc |
35322344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 35311934 - 35311730
Alignment:
| Q |
5 |
tcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttaca |
104 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| | | ||||| ||| ||||||||| |||||| | ||| |||||||| || ||| || ||| |
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| T |
35311934 |
tcaaagtgcagcaaatagccaaatccctagaccatcctttaacctaaccagactcactacaatgtttttagccaagggtctaactgcaagtgatctcaca |
35311835 |
T |
|
| Q |
105 |
gtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaa |
204 |
Q |
| |
|
|| || |||||||||||||||||||| ||| ||||||| ||| ||||||| ||||||| |||||||| |||||||||||| |||||| || ||||||| |
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| T |
35311834 |
gtactttctggtgcacacaccataggccaaggagagtgtcgattgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaa |
35311735 |
T |
|
| Q |
205 |
gaaaa |
209 |
Q |
| |
|
||||| |
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|
| T |
35311734 |
gaaaa |
35311730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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