View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3705_low_17 (Length: 247)
Name: NF3705_low_17
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_low_17 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 34042424 - 34042653
Alignment:
| Q |
18 |
agagaaagaaagagaaacccaaaaacactgtgcagattttccctctctttctattctcattttctctttcaacaatggatgattccgaacctgaatttcc |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042424 |
agagagagaaagagaaacccaaaaacactgtgcagattttccctctctttctattctaattttctctttcaacaatggatgattccgaacctgaatttcc |
34042523 |
T |
|
| Q |
118 |
gattcctactaggaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaacagacaccttcacaacccctcatgacatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042524 |
aattcctactaggaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaacagacaccttcacaacccctcatgacatt |
34042623 |
T |
|
| Q |
218 |
ctttttcgcaatcttgctgtttctataatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34042624 |
ctttttcgcaatcttgctgtttctataatc |
34042653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 4046652 - 4046495
Alignment:
| Q |
90 |
caatggatgattccgaacctgaatttccgattcctactaggaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaac |
189 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
4046652 |
caatggatgattccgaacctgaatttcaagttcctgccagaaaagaacttgatatcataaagaactacttcaatgtcgaatccgagttcatcgccgcagc |
4046553 |
T |
|
| Q |
190 |
agacaccttcacaacccctcatgacattctttttcgcaatcttgctgtttctataatc |
247 |
Q |
| |
|
|||| |||||||| | || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4046552 |
agacttcttcacaagctttcgtgacattctttttcgcaatcttgctgtttctgtaatc |
4046495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University