View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_low_18 (Length: 246)
Name: NF3705_low_18
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 21222944 - 21223133
Alignment:
| Q |
57 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatgaagaagagtttgaaagcaccttgttcttgttctcgaaatgtta |
156 |
Q |
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| T |
21222944 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatgaagaagagtttgaaagcaccttgttcttgttctggaaatgtta |
21223043 |
T |
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| Q |
157 |
aggtaagaaaaaacacatcatcttttaatgaactcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttttc |
246 |
Q |
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| T |
21223044 |
aggtaagaaaaaacacatcatcttttaattaactcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttttc |
21223133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 21222891 - 21222931
Alignment:
| Q |
7 |
acagagcaatatacataatttcaaaacaatgtctgaaactt |
47 |
Q |
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| T |
21222891 |
acagagcaatatagataatttgaaaacaaagtctgaaactt |
21222931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 44756523 - 44756577
Alignment:
| Q |
190 |
tcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttt |
244 |
Q |
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| T |
44756523 |
tcatttcagaattttcttaattttcatcaataagtgattttgtatttattttttt |
44756577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 44756280 - 44756337
Alignment:
| Q |
57 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatga |
114 |
Q |
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| T |
44756280 |
tgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga |
44756337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 44756412 - 44756454
Alignment:
| Q |
127 |
aagcaccttgttcttgttctcgaaatgttaaggtaagaaaaaa |
169 |
Q |
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| T |
44756412 |
aagcaccttgttcttgttctggaactgttaaggtaagaaaaaa |
44756454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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