View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3705_low_22 (Length: 238)

Name: NF3705_low_22
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3705_low_22
NF3705_low_22
[»] chr3 (5 HSPs)
chr3 (18-176)||(21223466-21223624)
chr3 (68-176)||(25224720-25224828)
chr3 (68-176)||(22288256-22288364)
chr3 (68-152)||(38088656-38088740)
chr3 (68-166)||(48204333-48204431)
[»] chr1 (5 HSPs)
chr1 (68-132)||(18428197-18428261)
chr1 (68-158)||(28506310-28506399)
chr1 (139-176)||(2044489-2044526)
chr1 (68-176)||(16756103-16756211)
chr1 (68-132)||(45806257-45806321)
[»] chr6 (4 HSPs)
chr6 (85-176)||(25084072-25084163)
chr6 (68-176)||(28099264-28099372)
chr6 (105-176)||(31412180-31412251)
chr6 (68-176)||(15614585-15614693)
[»] chr7 (7 HSPs)
chr7 (68-176)||(31492124-31492232)
chr7 (103-158)||(21411654-21411709)
chr7 (68-162)||(29059826-29059920)
chr7 (68-176)||(8839293-8839401)
chr7 (68-162)||(19477275-19477369)
chr7 (112-176)||(11486756-11486820)
chr7 (68-176)||(35707868-35707975)
[»] scaffold0182 (1 HSPs)
scaffold0182 (68-176)||(26352-26460)
[»] chr8 (4 HSPs)
chr8 (68-176)||(2743954-2744062)
chr8 (68-147)||(32422813-32422893)
chr8 (68-163)||(19715751-19715846)
chr8 (68-161)||(35207021-35207114)
[»] chr5 (6 HSPs)
chr5 (68-172)||(2798331-2798435)
chr5 (68-172)||(2804498-2804602)
chr5 (68-120)||(12336096-12336148)
chr5 (88-176)||(5123510-5123598)
chr5 (68-132)||(10591948-10592012)
chr5 (89-133)||(22297604-22297648)
[»] chr4 (4 HSPs)
chr4 (68-176)||(31307078-31307186)
chr4 (75-176)||(46016177-46016278)
chr4 (68-176)||(14854626-14854734)
chr4 (68-176)||(45994543-45994651)
[»] chr2 (4 HSPs)
chr2 (68-163)||(39401094-39401189)
chr2 (68-147)||(993775-993853)
chr2 (68-176)||(7020372-7020478)
chr2 (68-132)||(44732629-44732693)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 21223624 - 21223466
Alignment:
Q  18 gaattaaatgcggtaaataattgaagagatcttagatgagatgatacaagttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgtta 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  21223624 gaattgaatgcggtaaataattgaagagatcttagatgagatgatacaagttaaccaagattctggattcaaattcagtcttagacatgcagtagtgtta 21223525  T
Q  118 aaaattttagggagaacttgtcgcctatttaggttccacaatgctcaagaaattagtct 176  Q
    ||| ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||    
T  21223524 aaatttttagggagagcttgtcgcctatttagatcccacaatgctcaagaaattagtct 21223466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 25224720 - 25224828
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||||||||| |||| |||||||  | | ||||  |||||| || ||||||| | ||| |||||||||| |||| |||||||| ||||||||||||||     
T  25224720 ttaaccaaggtcctgggttcgaatcaagttttgggaatgcagcagcgttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagg 25224819  T
Q  168 aattagtct 176  Q
     ||||||||    
T  25224820 gattagtct 25224828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 22288256 - 22288364
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||| || |||  ||||||||||  |||| |||||||  | |||||||| | ||||||||||||||||| | ||||  ||| |||||| ||||||     
T  22288256 ttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactcttagggagaacttgtcgtccatttgagttacacaatactcaagg 22288355  T
Q  168 aattagtct 176  Q
    |||||||||    
T  22288356 aattagtct 22288364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 38088656 - 38088740
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggtt 152  Q
    |||||||||||||  | ||||||| ||   |||| |||||||||| ||||||| | |||||||||||||| ||||||||| ||||    
T  38088656 ttaaccaaggttccaggttcgaatccagctttgggcatgcagtagcgttaaaactcttagggagaacttgccgcctatttgggtt 38088740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 48204431 - 48204333
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaag 166  Q
    |||||||||||  ||| ||||||| ||  ||||| ||||||| |  |||||||   ||||||||| ||||||| | |||| ||||||||||||||||||    
T  48204431 ttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaacgttaaaacccttagggagagcttgtcgtccatttgggttccacaatgctcaag 48204333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 18428261 - 18428197
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggaga 132  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| |||||||||||    
T  18428261 ttaaccaaggttctggattcgaatccaaccttgggcatgcagcagtgttaaaacttttagggaga 18428197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 28506310 - 28506399
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaa 158  Q
    ||||| ||||||||||||||||||| ||  |||||||||||| |||||| ||| | ||| | |||  ||| ||||||||||||||||||||    
T  28506310 ttaactaaggttctggattcgaatttaactttggacatgcagcagtgttgaaactctta-gaagagtttgccgcctatttaggttccacaa 28506399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 2044489 - 2044526
Alignment:
Q  139 cgcctatttaggttccacaatgctcaagaaattagtct 176  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  2044489 cgcctatttgggttccacaatgctcaagagattagtct 2044526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 16756103 - 16756211
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||||||||||| || |||||||   |||| ||||||| || ||||||| | ||||||||| | |||||   |||| ||| ||||||||||| ||     
T  16756103 ttaaccaaggttctgggtttgaattcagcattgggcatgcagaagcgttaaaactcttagggagagcatgtcgtgcatttgggtcccacaatgctcgagg 16756202  T
Q  168 aattagtct 176  Q
     ||||||||    
T  16756203 gattagtct 16756211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 45806257 - 45806321
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggaga 132  Q
    ||||||||||| |||  |||||||||| |||||| ||||||| ||| |||||| | |||||||||    
T  45806257 ttaaccaaggtcctgagttcgaattcagtcttgggcatgcagcagttttaaaactcttagggaga 45806321  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 25084072 - 25084163
Alignment:
Q  85 ttcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaagaaattagtct 176  Q
    |||||||||| |||||||||||||| | |||||||| | ||||||||| ||||||  | ||||| |||||||||||||| ||| ||||||||    
T  25084072 ttcgaattcagtcttggacatgcagcaatgttaaaactcttagggagagcttgtcatccatttaagttccacaatgctcgagagattagtct 25084163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 28099264 - 28099372
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||| ||||| |||| ||||||| ||  ||||| ||||||| |||||||||| |||||||||||| |||||| | ||||  |||||| ||||||| ||     
T  28099264 ttaactaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagttccataatgctcgagg 28099363  T
Q  168 aattagtct 176  Q
     ||||||||    
T  28099364 gattagtct 28099372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 31412180 - 31412251
Alignment:
Q  105 tgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaagaaattagtct 176  Q
    ||||| |||||||||| | |||||||||   || |||| |||| ||||||||||||||| ||||||||||||    
T  31412180 tgcagcagtgttaaaactcttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtct 31412251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 15614693 - 15614585
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||| ||  ||| |||||||||| ||||||||||| || |  ||||||| |||| || |||||||  | |||||||  || ||||||||||| ||     
T  15614693 ttaaccaatgtcatgggttcgaattcagtcttggacatgtagcaacgttaaaacttttcggaagaacttaccacctatttgagtcccacaatgctctagg 15614594  T
Q  168 aattagtct 176  Q
    |||||||||    
T  15614593 aattagtct 15614585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 31492124 - 31492232
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| |||||||||| | ||||||||| | || |||| |||||||| ||||||||||| ||     
T  31492124 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagg 31492223  T
Q  168 aattagtct 176  Q
     ||||||||    
T  31492224 gattagtct 31492232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 21411709 - 21411654
Alignment:
Q  103 catgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaa 158  Q
    |||||||||| ||||||| | ||||  |||||||||||||||||||||||||||||    
T  21411709 catgcagtagcgttaaaactcttagaaagaacttgtcgcctatttaggttccacaa 21411654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 29059826 - 29059920
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgct 162  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| |||||||||| | ||||||||| | || |||| |||| ||| ||||||||||    
T  29059826 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgct 29059920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 8839401 - 8839293
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| || ||||||| | ||||||||||  || ||||||||||| | ||||||| ||| ||     
T  8839401 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatctgccgcctatttagatcccacaatactcgagg 8839302  T
Q  168 aattagtct 176  Q
     ||||||||    
T  8839301 gattagtct 8839293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 19477369 - 19477275
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgct 162  Q
    |||||||||||||||| || |||| ||  ||||| ||||||  |||||||||| | ||||||||| |||| || | |||| ||| ||||||||||    
T  19477369 ttaaccaaggttctgggtttgaatccagccttgggcatgcaacagtgttaaaactcttagggagagcttgccggccatttgggtcccacaatgct 19477275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 11486820 - 11486756
Alignment:
Q  112 gtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaagaaattagtct 176  Q
    ||||||||| | ||| | ||| |||| |||| |||| ||||||||||||||||||| ||||||||    
T  11486820 gtgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtct 11486756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 35707868 - 35707975
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||||||||||| ||||||| |||  |||||||||||  |  ||||||| | |||||||||||||| | || |||||| | | ||||||||| ||     
T  35707868 ttaaccaaggttctgg-ttcgaatccaactttggacatgcaacaacgttaaaattcttagggagaacttgcctcccatttagatcctacaatgctcgagg 35707966  T
Q  168 aattagtct 176  Q
     ||||||||    
T  35707967 gattagtct 35707975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 26352 - 26460
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| |||||||||| | ||||||||| | || |||| |||| ||| |||||||| || |||    
T  26352 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgaga 26451  T
Q  168 aattagtct 176  Q
     ||||||||    
T  26452 gattagtct 26460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 2743954 - 2744062
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| |||||||||| | ||||||||| | ||||| | |||| ||| ||||||||||| ||     
T  2743954 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcatgtcgtccatttgggtcccacaatgctcgagg 2744053  T
Q  168 aattagtct 176  Q
     ||||||||    
T  2744054 gattagtct 2744062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 32422893 - 32422813
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggac-atgcagtagtgttaaaaattttagggagaacttgtcgcctattt 147  Q
    ||||||||| | ||||| |||||||||||||||| | |||||| |||||||||| |||| ||||||| ||| |||| ||||    
T  32422893 ttaaccaagatcctggaatcgaattcaatcttgggcaatgcagcagtgttaaaactttttgggagaaattgccgcccattt 32422813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 19715846 - 19715751
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctc 163  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| || ||||||| | | ||||||| |||| |||| |||| ||| |||||||||||    
T  19715846 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactctcagggagagcttgccgcccatttgggtcccacaatgctc 19715751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 35207021 - 35207114
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgc 161  Q
    ||||||||| |||||| |||||||| || ||||||||||||| || ||||||| | ||| ||| | | ||||| | |||| ||| |||||||||    
T  35207021 ttaaccaagattctgggttcgaatttaaccttggacatgcagcagcgttaaaactcttaaggaaagcatgtcgtccatttgggtcccacaatgc 35207114  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 2798435 - 2798331
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||||||||||| ||||||| ||| ||||  ||||||| || ||||||| ||||||||||| |||  |||| |||| | ||| ||||||||| |||    
T  2798435 ttaaccaaggttctgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagagcttaccgcccatttggtttctacaatgctctaga 2798336  T
Q  168 aatta 172  Q
     ||||    
T  2798335 gatta 2798331  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 2804602 - 2804498
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||||||| ||| ||||||| ||| ||||  ||||||| || ||||||| ||||||||||| |||  |||| |||| | ||| ||||||||| |||    
T  2804602 ttaaccaaggttttgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagagcttaccgcccatttggtttctacaatgctctaga 2804503  T
Q  168 aatta 172  Q
     ||||    
T  2804502 gatta 2804498  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 12336148 - 12336096
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaa 120  Q
    ||||||||||| ||||||| ||||||||  |||| ||||||||||||||||||    
T  12336148 ttaaccaaggtcctggatttgaattcaacattgggcatgcagtagtgttaaaa 12336096  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 5123598 - 5123510
Alignment:
Q  88 gaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaagaaattagtct 176  Q
    |||||||  ||||| ||||||| |||||||||| | ||||||||| | || |||| |||| ||| ||||||||||| ||  ||||||||    
T  5123598 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtct 5123510  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 10591948 - 10592012
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggaga 132  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| |||||||||| | |||||||||    
T  10591948 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggaga 10592012  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 22297648 - 22297604
Alignment:
Q  89 aattcaatcttggacatgcagtagtgttaaaaattttagggagaa 133  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||||||    
T  22297648 aattcagtcttggatatgcagtagcgttaaaacttttagggagaa 22297604  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 31307186 - 31307078
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| |||||||||| | ||||||||| | || |||| |||| ||| ||||||||||| ||     
T  31307186 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagg 31307087  T
Q  168 aattagtct 176  Q
     ||||||||    
T  31307086 gattagtct 31307078  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 46016177 - 46016278
Alignment:
Q  75 aggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaagaaattagt 174  Q
    |||| |||| ||||||| ||  ||||| ||||||| |||||||||| | ||||||||| | || |||| |||| ||| ||||||||||| |  |||||||    
T  46016177 aggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagt 46016276  T
Q  175 ct 176  Q
    ||    
T  46016277 ct 46016278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 14854626 - 14854734
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||||||||||| ||||||| ||  ||||| ||||||| |  ||||||| | ||||||||| |||| |||| |||| ||| | ||||| ||| ||     
T  14854626 ttaaccaaggttctgggttcgaatccagccttgggcatgcagcatcgttaaaactcttagggagagcttgccgcccatttgggtccaacaattctcgagg 14854725  T
Q  168 aattagtct 176  Q
     ||||||||    
T  14854726 gattagtct 14854734  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 45994543 - 45994651
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    ||||||||||| |||||||||||| ||  ||||| ||||||  |  ||||||| | ||||||||| | || |||| |||| |||  |||||||||| |||    
T  45994543 ttaaccaaggtcctggattcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgacgcccatttgggtctcacaatgctcgaga 45994642  T
Q  168 aattagtct 176  Q
     ||||||||    
T  45994643 gattagtct 45994651  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 39401189 - 39401094
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctc 163  Q
    ||||||||| |  ||||||||||||||  ||||| |||||||||   |||||| ||||||||||| || |||| | |||||||| |||||||||||    
T  39401189 ttaaccaagatcttggattcgaattcagccttgggcatgcagtatcattaaaacttttagggagagctcgtcgtccatttaggtcccacaatgctc 39401094  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 993775 - 993853
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctattt 147  Q
    ||||||||||| |||| ||||||||||| ||||| ||||||| || | ||||| | |||||||||||||| |||| ||||    
T  993775 ttaaccaaggtcctgggttcgaattcaaccttgggcatgcagcagcg-taaaactcttagggagaacttgccgcccattt 993853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 7020478 - 7020372
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggagaacttgtcgcctatttaggttccacaatgctcaaga 167  Q
    |||||||||||  || ||||||||||||| | || ||||||| | |||||||| | |||||||||||||| |||| |||| ||| | ||||||||| ||     
T  7020478 ttaaccaaggtcttgaattcgaattcaatttagg-catgcagcaatgttaaaa-tcttagggagaacttgccgcccatttgggtcctacaatgctcgagt 7020381  T
Q  168 aattagtct 176  Q
     ||||||||    
T  7020380 gattagtct 7020372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 44732693 - 44732629
Alignment:
Q  68 ttaaccaaggttctggattcgaattcaatcttggacatgcagtagtgttaaaaattttagggaga 132  Q
    ||||||||||| |||| ||||||| ||  ||||| ||||||| |||||||||| | |||||||||    
T  44732693 ttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggaga 44732629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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