View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_low_3 (Length: 433)
Name: NF3705_low_3
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 1957055 - 1957317
Alignment:
| Q |
14 |
caaaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcatcatccaggaatgacacaaaagtggttaaatgcttcaagt |
113 |
Q |
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| T |
1957055 |
caaaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcaccatccaggaatgacacaaaagtggttgaatgcttcaagt |
1957154 |
T |
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| Q |
114 |
gctttctctgtttgggatgcaccccctaacaaagacaatccaattccactttatcttcgtattcctagttaatcaatttgactaagcaatatgaaatatg |
213 |
Q |
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| T |
1957155 |
gctttctctgtttgggatgcacccccaaacaaattcaatccaattccactttatcttcgtattcctagttaatcaatttgactaagcaatatgaaatatg |
1957254 |
T |
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| Q |
214 |
ctagcaacacacttttttcaatgcagactttttaatttgtggaaagtcaaatgagtctcgtta |
276 |
Q |
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| T |
1957255 |
ctagcaacacattttttttaatgcagactctttaatttgtgaaaattaaaacgagtttcgtta |
1957317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 1942138 - 1942314
Alignment:
| Q |
16 |
aaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcatcatccaggaatgacacaaaagtggttaaatgcttcaagtgc |
115 |
Q |
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| T |
1942138 |
aaaagggtttgaaatgggtgaacacaactgaaaccttaaaggatgtgattgatcgtcactacccaaaaatgacaaacaaatggttgaatgcttcaagtgc |
1942237 |
T |
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| Q |
116 |
tttctctgtttgggatgcaccccctaacaaagacaatccaattccactttatcttcgtattcctagttaatcaattt |
192 |
Q |
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| T |
1942238 |
tttctctgtttgggatgcaccaccaaacaaacacaaccctattccaatttacttgcgtgttcctagttaatcaattt |
1942314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 1957462 - 1957525
Alignment:
| Q |
327 |
tatagtaatgaataaaactaaggataggaataatgaaatgagtgtggcaactcatctagaagaa |
390 |
Q |
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| T |
1957462 |
tatagtaatgaataaaactaaggataggaataatgaaatgagtgtggcaactcatctagaagaa |
1957525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 1928159 - 1928306
Alignment:
| Q |
14 |
caaaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcatcatccaggaatgacacaaaagtggttaaatgcttcaagt |
113 |
Q |
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||||||||| || |||||||| |||||||||||||||||||| || |||||||||||||| |||||| ||||||| | || ||| | || |||| ||| |
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| T |
1928159 |
caaaaaggggttagaatgggtcaacacaactgagagcttaaaagatgtgattgatcgtcaccatccacaaatgacaaacaaatggatgaactcttccagt |
1928258 |
T |
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| Q |
114 |
gctttctctgtttgggatgcaccccctaacaaagacaatccaattcca |
161 |
Q |
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| T |
1928259 |
gctttctctgtttgggactcaccctcaatcaaacacaatcctattcca |
1928306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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