View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3705_low_6 (Length: 379)
Name: NF3705_low_6
Description: NF3705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3705_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 364
Target Start/End: Original strand, 10467759 - 10468112
Alignment:
| Q |
9 |
agcaaaggagcaagttgtatgcttaaaaagtaggtaagaggcaagatattaatattatacaaaatgaaatacttttttggtggtgtatacaaaatgaaga |
108 |
Q |
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| T |
10467759 |
agcaatggagcaagttgtatgcttaaaaagtaggtaagaggcaagatattaatattatacaaaatgaaatacttttttggtggtgtatacaaaatgaaga |
10467858 |
T |
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| Q |
109 |
ctttgaaaaagtagatggatccgttaacctcttaccttaaagtttttaattaagatgtattaatgctaaaggctgttttcctctttattgattaatttca |
208 |
Q |
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| T |
10467859 |
ctttgaaaaagtagatggatccgttaacctcttaccttaaagtttttaattaagatgtattaatgctaaaggctgttttcctctttattgattaatttca |
10467958 |
T |
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| Q |
209 |
ttgaatggtatgtatttggtcctgcatgcccttttgtgttgttaatacttcataatatatcatggttgtggaacccatttgaaatggagtattagctaac |
308 |
Q |
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| T |
10467959 |
ttgaatggtatgtatttggtcctgcatgcccttttgtgttgttaatacttcataatatatcatggttgtgggacccatttgaaat-gagtattagccaac |
10468057 |
T |
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| Q |
309 |
tttgttcatgacccgttgacattttccttatgagtgaaagaaattcacacatattt |
364 |
Q |
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| T |
10468058 |
-ttgttcatgacccgttgacattttccttatgagggaaagaaattcacacatattt |
10468112 |
T |
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