View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3706_high_15 (Length: 302)

Name: NF3706_high_15
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3706_high_15
NF3706_high_15
[»] chr8 (2 HSPs)
chr8 (15-96)||(40585929-40586010)
chr8 (181-240)||(40586095-40586154)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-65)||(490132-490194)
[»] chr2 (1 HSPs)
chr2 (3-65)||(42261297-42261359)
[»] chr3 (2 HSPs)
chr3 (1-65)||(1683773-1683837)
chr3 (1-51)||(46860777-46860827)
[»] chr5 (1 HSPs)
chr5 (27-65)||(10054620-10054658)
[»] chr4 (1 HSPs)
chr4 (3-51)||(35662741-35662789)
[»] chr1 (1 HSPs)
chr1 (1-65)||(41136113-41136177)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 40585929 - 40586010
Alignment:
Q  15 aatatttgccccacaaatctaaatttcattgacgtgagatttaaagttacccagttcttgggcttttgccctcttttgtacc 96  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40585929 aatatttgccccacacatctaaatttcattgacgtgagatttaaagttacccaattcttgggcttttgccctcttttgtacc 40586010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 40586095 - 40586154
Alignment:
Q  181 gtatctgccctttgctcgcaatggggaaattttttcacatacaaggccaatatatatata 240  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  40586095 gtatctgccatttgctcgcaatgtggaaattttttcacatacaaggctaatatatatata 40586154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 490194 - 490132
Alignment:
Q  3 ttggttgccatcaatatttgccccacaaatctaaatttcattgacgtgagatttaaagttacc 65  Q
    |||||||||||  ||| |||| |||||||||||||||||||||||||||||||  ||||||||    
T  490194 ttggttgccattgatacttgctccacaaatctaaatttcattgacgtgagattagaagttacc 490132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 42261359 - 42261297
Alignment:
Q  3 ttggttgccatcaatatttgccccacaaatctaaatttcattgacgtgagatttaaagttacc 65  Q
    |||||||||||  ||| |||| |||||||||||||||||||||||||||||||  ||||||||    
T  42261359 ttggttgccattgatacttgctccacaaatctaaatttcattgacgtgagattagaagttacc 42261297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1683773 - 1683837
Alignment:
Q  1 tattggttgccatcaatatttgccccacaaatctaaatttcattgacgtgagatttaaagttacc 65  Q
    ||||||||| |||  || |||| |||||| |||||||||||||||| |||||||||| |||||||    
T  1683773 tattggttgtcattgatgtttgtcccacacatctaaatttcattgatgtgagatttagagttacc 1683837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46860777 - 46860827
Alignment:
Q  1 tattggttgccatcaatatttgccccacaaatctaaatttcattgacgtga 51  Q
    |||||||||||||  |||||||| |||| ||||||||||||||||| ||||    
T  46860777 tattggttgccattgatatttgctccacgaatctaaatttcattgatgtga 46860827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 10054658 - 10054620
Alignment:
Q  27 acaaatctaaatttcattgacgtgagatttaaagttacc 65  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  10054658 acaaatctaaatttcattgatatgagatttaaagttacc 10054620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 35662741 - 35662789
Alignment:
Q  3 ttggttgccatcaatatttgccccacaaatctaaatttcattgacgtga 51  Q
    |||||||||||  ||| |||| |||||||||||||||||||||| ||||    
T  35662741 ttggttgccattgatacttgctccacaaatctaaatttcattgatgtga 35662789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41136113 - 41136177
Alignment:
Q  1 tattggttgccatcaatatttgccccacaaatctaaatttcattgacgtgagatttaaagttacc 65  Q
    ||||||||| ||  |||| || |||||| ||||||||||||||||| |||||||||  |||||||    
T  41136113 tattggttgtcaataatactttccccacgaatctaaatttcattgatgtgagatttggagttacc 41136177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University