View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3706_high_23 (Length: 250)
Name: NF3706_high_23
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37565406 - 37565165
Alignment:
| Q |
1 |
atgccgatgaaggagcctctttcttgcaagaagaataataatccttcaccgctattctattggtcgatacttttatctctttgcacaccttgtccaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565406 |
atgccgatgaaggagcctctttcttgcaagaagaataataatccttcaccgctattctattggtcgatacttttatctctttgcacaccttgtccaacat |
37565307 |
T |
|
| Q |
101 |
taccaagaaatcgcgtacaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatctgcagtgctcttaacctcagtcgtaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565306 |
taccaagaaatcgcgtacaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatctgcagtgctcttaacctcagtcgtaatc |
37565207 |
T |
|
| Q |
201 |
ctcttctcttcccctatcaaccatttcacttcctcctttgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37565206 |
ctcttctcttcccctatcaaccatttcacttcctcttttgct |
37565165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 34624635 - 34624732
Alignment:
| Q |
75 |
atctctttgcacaccttgtccaacattaccaagaaatcgcgtacaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatc |
172 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| ||||| || |||||||| | | |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
34624635 |
atctctttgcacaccttatccaacattattaagaaatcacgtactattacaaacaatcttaacccttcatctcttcctgcactcccatgaaaataatc |
34624732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 15513469 - 15513358
Alignment:
| Q |
77 |
ctctttgcacaccttgtccaacattaccaagaaatcgcgtacaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatctgca |
176 |
Q |
| |
|
|||||| || ||||| ||||| |||| |||||| || || |||| || ||||||||||| |||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
15513469 |
ctctttacaaaccttatccaatattatcaagaagtcacgcacaaccaaaaacaaacgcaacccttcatctttccctgcattcccgtgaaaataatccgcc |
15513370 |
T |
|
| Q |
177 |
gtgctcttaacc |
188 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
15513369 |
gtactcttaacc |
15513358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University