View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3706_high_3 (Length: 499)

Name: NF3706_high_3
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3706_high_3
NF3706_high_3
[»] chr6 (1 HSPs)
chr6 (13-482)||(32344136-32344581)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 32344136 - 32344581
Alignment:
Q  13 aatataaactatagtggatgcatgcgcacattggataatagtaatattactacattgtgtgattaaatttgttggggtggtggcacccatttacaggttg 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32344136 aatataaactatagtggatgcatgcacacattggataatagtaatattactacattgtgtgattaaatttgttggggtggtggcacccatttacaggttg 32344235  T
Q  113 tagatggtgatggggtttataaataggaccgtatggtatatagggaaatttattaaccaatatagtaaaaagttttatatttaaggacgaattttgtaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32344236 tagatggtgatggggtttataaataggaccgtatggtatatagggaaatttattaaccaatatagtaaaaagttttatatttaaggacgaattttgtaac 32344335  T
Q  213 caaaatatttcaatgtctcttagtgacttaactttaaaatgtctctaaactatggttgctaatattaaccatcaatattacattttcgattctaaataaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  32344336 caaaatatttcaatgtctcttagtgacttaactttaaaatgtctctaaactatggttgctaatattaaccatcaatattagattttcgattctaaatata 32344435  T
Q  313 tcgttaaatctatcactttatcaccttttctatagaagatttatatgaaagacaattgatgatatgactatttgattaatttttaaatagagatcgaata 412  Q
    || ||||      ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                  
T  32344436 tc-ttaa------cactacatcaccttttctatagaagatttatatgaaagacaattgatgatatgactatttgattaaattttaa-------------- 32344514  T
Q  413 tattatagaacaaagagtgtattattattaagccataaattataatacaggaccatttgtatgtttgggt 482  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32344515 ---tatagaacaaagagtgtattattattaagccataaattataatacaggaccatttgtatgtttgggt 32344581  T

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