View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_high_6 (Length: 441)
Name: NF3706_high_6
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 56232667 - 56232372
Alignment:
| Q |
1 |
catcatattatcggatagagtaattctcaatgaatcatataataattccatgagtaacctaacggtgttaggtaacttaccagttgtcatgattgcagat |
100 |
Q |
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| T |
56232667 |
catcatattatcagatagagtaattctcaatgaatcatatcataattccatgagtaacctaacggtgttaggtaacttaccagttgtcatgattgcagat |
56232568 |
T |
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| Q |
101 |
ttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccagacatggtaatga |
200 |
Q |
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| T |
56232567 |
ttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccagacatggtaatga |
56232468 |
T |
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| Q |
201 |
aaggaaccctacgtttatcaaagtccaattctgtgggactaatcgctcctgagtacgcagcaataatgttcacaccgggtgcggttacatccggct |
296 |
Q |
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| T |
56232467 |
aaggaaccctacgtttatcaaagtccaattctgtgggactaatcgctcctgagtacgcagcaataatgttcacaccgggtgcggttacatccggct |
56232372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 342 - 440
Target Start/End: Complemental strand, 56232326 - 56232228
Alignment:
| Q |
342 |
ctacgactaactcgtgtaatttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag |
440 |
Q |
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| T |
56232326 |
ctacgaccaactcgtgtaatttggaaaatactaagttaggaaacaaaatatgtagtatgatttatgacgcaatgtttgaaattaataatgaaagaatag |
56232228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 42761220 - 42761348
Alignment:
| Q |
77 |
ttaccagttgtcatgattgcagatttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgaca |
176 |
Q |
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| T |
42761220 |
ttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggacatgaca |
42761319 |
T |
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| Q |
177 |
tggatgttccagacatggtaatgaaagga |
205 |
Q |
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| || || || ||||| ||||| |||||| |
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| T |
42761320 |
tcgaagtgcctgacatagtaataaaagga |
42761348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 39190449 - 39190187
Alignment:
| Q |
34 |
atcatataataattccatgagtaacctaacggtgttaggtaacttaccagttgtcatgattgcagatttaatagcggatggactccagttggggtggaga |
133 |
Q |
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| T |
39190449 |
atcatatcatcatttcatgagtaatctaatgatgttacattacttaccagttgtcatgattgcagatttaatagctgatggactccaggtggggtggaga |
39190350 |
T |
|
| Q |
134 |
gtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctg |
233 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||| || |
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| T |
39190349 |
gtcttaagaaggccaacgactccagccacatgagggcatgacatggatgttccagacattgtcatgaaaggaaccctacgtttatcagaatccaattttg |
39190250 |
T |
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| Q |
234 |
tgggactaatcgctcctgagtacgcagcaataatgttcacaccgggtgcggttacatccggct |
296 |
Q |
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| T |
39190249 |
tgggactaaccgctcctgagtaggcagcaataatgttcacaccgggtgcggttacatctggct |
39190187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 39218836 - 39218757
Alignment:
| Q |
362 |
ttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaataga |
441 |
Q |
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| T |
39218836 |
ttggaaaatactatgttaggaaataaaatatgtagtatgatttgtgacacaatgtttgaaattaataatgaaagaataga |
39218757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 39190098 - 39190018
Alignment:
| Q |
359 |
aatttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag |
440 |
Q |
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| T |
39190098 |
aatttggaaaataccatgttaggaaataaaatatgtagtatgatttgtgacaca-tgtttgaaattaataatgaaagaatag |
39190018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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