View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_1 (Length: 830)
Name: NF3706_low_1
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 12 - 688
Target Start/End: Original strand, 4110462 - 4111157
Alignment:
| Q |
12 |
atcatcaacgtccaaatgaggaagtagcttttttgtttctagttattgacttcttgtcccctgctggggttttgccgttaaggaacaaagagagttttct |
111 |
Q |
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| T |
4110462 |
atcatgaacgtccaaatgaggaagtagcttttttgtttctagttattgacttcttgtcccctgctggggttttgccgttaaggaacaaagagagttttct |
4110561 |
T |
|
| Q |
112 |
caaagtagtactttggaaaacatgatcatgagtgaagaaggctaggnnnnnnnttatttctcataaagcataacaatggcatctccaactaatcaaatag |
211 |
Q |
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| T |
4110562 |
caaagtagtactttggaaaacacgatcatgagtgaagaaggctaggaaaaaaattatttctcataaagcatcacaatggcatctccaactaatcaaatag |
4110661 |
T |
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| Q |
212 |
taattgaatttaagtaactaa--------------tgataaattattcaagtaagaatcgatttgaactccgactaaaacaactttact----------- |
286 |
Q |
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| T |
4110662 |
taattgaatttaagtaactaacgaatttcagttaatgataaattattcaagcaagaattggtttggactccgactaaaacaactttagtcagattttatt |
4110761 |
T |
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| Q |
287 |
tttatctttcagttgaacttcggataatcagagtttcttttacaccaagagttttaagaaagaaaagaagaaggaactccaattattgcaaaacaagggc |
386 |
Q |
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||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4110762 |
tttatctttcagttgaattttggataatcagagtctcttttataccaagagttttaagaaagaaaagaagaaggaactccaattattgcaaaacaagggc |
4110861 |
T |
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| Q |
387 |
atgttctatttcaatttcttgctcttttttggcacattcgtaaacatccatggaatcaaatcctctttgctatgtacctctaaaaaggaattaacataac |
486 |
Q |
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| T |
4110862 |
atgttctattttaatttcttgctc------ggcacattcgtaaacatccatggaatcaaatcctctttgctatgtacctctaaaaaggaattaacataac |
4110955 |
T |
|
| Q |
487 |
tactttaggcacagttcattacttaattgagttgttattttcaaacaagaatccttttcataaaagaagttggaattaatttggaactagttggaattgc |
586 |
Q |
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| T |
4110956 |
tactttaggcacagttcattacttaattgagttgttattttcaaacaagaatccttttcataaaagaagttggaattaatttggaactagttggaattgc |
4111055 |
T |
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| Q |
587 |
aattccaactcttccttcttatattcttgtgttgactactatgatcagcattattaaactgctttttcttttcataaaatgatagatagtgaccttcatt |
686 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4111056 |
aattccaactcttccttcttatattcttgtgttgactactatgatcagcataattaaactgctttttcttttcataaaatgatagatagtgaccttaatt |
4111155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 688 - 815
Target Start/End: Original strand, 4111180 - 4111307
Alignment:
| Q |
688 |
tctttttaaataccaaggtggataaataacaaatgataaatcacaaataaccactatacaacataaaaagttattgtttccttagatttgttaaggatgc |
787 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4111180 |
tctttttaaataccaaggtggataaataataaatgataaatcacaaataaccactatacaacataaaaagttattgtttccttagatttgttaaggatgc |
4111279 |
T |
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| Q |
788 |
aatatgcaacttgtgaaaataaaatagt |
815 |
Q |
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| T |
4111280 |
aatatgcaacttgtgaaaataaaatagt |
4111307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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