View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3706_low_10 (Length: 411)

Name: NF3706_low_10
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3706_low_10
NF3706_low_10
[»] chr3 (2 HSPs)
chr3 (18-403)||(15002245-15002631)
chr3 (160-231)||(15002139-15002210)
[»] chr7 (2 HSPs)
chr7 (160-222)||(17944565-17944627)
chr7 (156-233)||(37223830-37223907)
[»] chr2 (1 HSPs)
chr2 (162-233)||(23974903-23974974)
[»] chr1 (1 HSPs)
chr1 (160-222)||(4119115-4119177)
[»] chr8 (2 HSPs)
chr8 (160-233)||(21373446-21373519)
chr8 (160-221)||(24196171-24196232)
[»] chr5 (2 HSPs)
chr5 (179-222)||(15226180-15226223)
chr5 (158-222)||(22587024-22587088)
[»] chr4 (5 HSPs)
chr4 (178-233)||(7833802-7833857)
chr4 (162-211)||(18977185-18977234)
chr4 (160-233)||(38978713-38978786)
chr4 (158-218)||(19987937-19987997)
chr4 (27-71)||(23814193-23814237)
[»] scaffold0007 (1 HSPs)
scaffold0007 (94-152)||(262025-262083)
[»] scaffold0251 (1 HSPs)
scaffold0251 (158-218)||(12598-12658)


Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 15002245 - 15002631
Alignment:
Q  18 acttaagtcataacaattggtgttttcattgagtcggacaacagaaa-ggtctacttattgcctagattaagtgatagtgagtgaagccgcaaaaaatga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||||||| ||    
T  15002245 acttaagtcataacaattggtgttttcattgagtcggacaacagaaaaggtctacttatcgcctagattaagtattagtgagtgaagccgcaaaaaagga 15002344  T
Q  117 aagggctaccaacaggcgagtgccaatagagtgaaaaacgtaatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatga 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15002345 aagggctaccatcaggcgagtgccaatagagtgaaaaacgtaatgttaggagttctatatcgagtagttaaaagtgctcgacgtagtacttaagccatga 15002444  T
Q  217 ggctctatcacctaatgacttatcaattatcatagtataaaaaggaacttgtatctctctaccattttcgaaaaagaatgctgaaagagcagagcatcct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15002445 ggctctatcacctaatgacttatcaattatcatagtataaaaaggaacttgtatctctctaccattttcgaaaaagaatgctgaaagagcagagcatcct 15002544  T
Q  317 ggacctccaacgaaccaaagtaatattggatcaacaaagggatttctttgagactccacaaaatagtaaaacatttgcacctttgct 403  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15002545 ggacctccaacgaaccaaagtaaaattggatcaacaaagggatttctttgagactccacaaaatagtaaaacatttgcacctttgct 15002631  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 15002139 - 15002210
Alignment:
Q  160 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaa 231  Q
    ||||| ||||||||||||||||||||||||||| ||||||| || |||||| |||||| |||| ||||||||    
T  15002139 tgttatgagttctatatcgagtagataaaagtgttcgacgtggtgcttaagtcatgagcctctttcacctaa 15002210  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 17944565 - 17944627
Alignment:
Q  160 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctct 222  Q
    |||||||||| | | ||||||||||||||||||||||| || |||||||||||||||||||||    
T  17944565 tgttaggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctct 17944627  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 37223830 - 37223907
Alignment:
Q  156 gtaatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 233  Q
    ||||||| |||||| | | || |||||||||||||||||| | |  |||||||||||||||| ||||  |||||||||    
T  37223830 gtaatgtaaggagtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatg 37223907  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 23974903 - 23974974
Alignment:
Q  162 ttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 233  Q
    |||||||||| | ||||||||| ||||||||||| | || |||||||||||||||| |||| ||||||||||    
T  23974903 ttaggagttccacatcgagtagttaaaagtgctcaatgtggtacttaagccatgagactctttcacctaatg 23974974  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 4119115 - 4119177
Alignment:
Q  160 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctct 222  Q
    |||||||||| | | |||||||||||||||||| ||||| | |||||||||||||||||||||    
T  4119115 tgttaggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctct 4119177  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 21373519 - 21373446
Alignment:
Q  160 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 233  Q
    |||||||| ||||| ||||||||||||||||||||| || | |||||||| ||||| ||||||  |||||||||    
T  21373519 tgttaggatttctacatcgagtagataaaagtgctcaacatggtacttaatccatgcggctcttccacctaatg 21373446  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 24196232 - 24196171
Alignment:
Q  160 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctc 221  Q
    |||||||||||| | ||||| |||||||||||  ||||||| || ||||||| |||||||||    
T  24196232 tgttaggagttccacatcgattagataaaagttatcgacgtggtgcttaagctatgaggctc 24196171  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 15226223 - 15226180
Alignment:
Q  179 agtagataaaagtgctcgacgtagtacttaagccatgaggctct 222  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||    
T  15226223 agtagataaaagtgcccgacgtggtacttaagctatgaggctct 15226180  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 22587088 - 22587024
Alignment:
Q  158 aatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctct 222  Q
    ||||||| |||| | | ||||||||  |||||||| | || ||||||||||||||||||||||||    
T  22587088 aatgttacgagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctct 22587024  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 7833857 - 7833802
Alignment:
Q  178 gagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 233  Q
    ||||||||||||||||| || || ||||||||| |||||||||||  |||||||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatg 7833802  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 18977185 - 18977234
Alignment:
Q  162 ttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagc 211  Q
    |||||||| | |||||||| ||||||||||| ||||||| ||||||||||    
T  18977185 ttaggagtcccatatcgagcagataaaagtgttcgacgtggtacttaagc 18977234  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 38978713 - 38978786
Alignment:
Q  160 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 233  Q
    |||||||||| | | || ||||||||||||||| | || || |||||||| ||||||||||||  |||||||||    
T  38978713 tgttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatg 38978786  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 19987937 - 19987997
Alignment:
Q  158 aatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgagg 218  Q
    |||||||||||| | | ||||||||||| ||| |||| || || |||||||||||||||||    
T  19987937 aatgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgagg 19987997  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 23814237 - 23814193
Alignment:
Q  27 ataacaattggtgttttcattgagtcggacaacagaaaggtctac 71  Q
    ||||||||| ||||||||||||||| |||| |||||||| |||||    
T  23814237 ataacaattagtgttttcattgagttggactacagaaagttctac 23814193  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 262025 - 262083
Alignment:
Q  94 gtgagtgaagccgcaaaaaatgaaagggctaccaacaggcgagtgccaatagagtgaaa 152  Q
    |||||||||||||| ||||| ||||||||||||| ||||  |||| | |||||||||||    
T  262025 gtgagtgaagccgccaaaaaggaaagggctaccatcaggtcagtgtcgatagagtgaaa 262083  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 12598 - 12658
Alignment:
Q  158 aatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgagg 218  Q
    |||||||||||| | | ||||||||||| |||||||| || ||  ||||||||||||||||    
T  12598 aatgttaggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgagg 12658  T

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