View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_13 (Length: 364)
Name: NF3706_low_13
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 40965753 - 40966102
Alignment:
| Q |
10 |
attattctattttcgtgtca-tttgtaaaattttgttctttacatgtgtatgtgctgatgctcttaattcttgaaggtttcctaattgcttatgaatcaa |
108 |
Q |
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| T |
40965753 |
attattctattttcgtgtcaatttgtaaaattctgttctttacatgtgtatgtgctgatgctcttaattcttgaaggtttcctaattgcttatgaatcaa |
40965852 |
T |
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| Q |
109 |
catgtcgct--------attcaacaggtcgaattgtagtgtgcacaactgaattaagtcgtgcacgatacataaattttatcatatgttggattaaaaat |
200 |
Q |
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| T |
40965853 |
catgtcgctgcttgtaaattcaacaggtcgaattgtagtgtgcacaactggattaagtcgtgcacgatacataaattttatcatatgttggattaaaaat |
40965952 |
T |
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| Q |
201 |
atttaaccaatcttatagtggacggcatagatataatcttctcatctcccctttccctgcatatcagaatccacacctct--acatcatttatagtagta |
298 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40965953 |
atttaaccaatcttatagtggacggcatacatataatcttctcatctcccctttccctgcatatcagaatccacacctctacacatcatttatagtagta |
40966052 |
T |
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| Q |
299 |
attcattcaacaatgataagaacccagtaaatataaatcaaagaaaagat |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40966053 |
attcattcaacaatgataagaacccagtaaatataaatcaaagaaaagat |
40966102 |
T |
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