View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_15 (Length: 340)
Name: NF3706_low_15
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_15 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 35828816 - 35828501
Alignment:
| Q |
19 |
ctcttgaaccctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttggcactga |
118 |
Q |
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| T |
35828816 |
ctcttgaaccctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttggcactga |
35828717 |
T |
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| Q |
119 |
tgcactagacacaaaccttgcctcatcacccttttcctcaaataaaccagaaagatcaaaaccttgcgaaaacgatataatatcaaaagcattcaaactt |
218 |
Q |
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| T |
35828716 |
tgcactagacacaaaccttgcctcatcacccttttcctcaaataaaccagaaagatcaaaaccttgcgaaaacgatataatatcaaaagcattcaaactt |
35828617 |
T |
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| Q |
219 |
gcaggccttggcaacgaaccacgattcctgatccttctattcacaacctcagaatccgattcatttcctgatactgattccagtacttcatcgtgatgat |
318 |
Q |
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| T |
35828616 |
gcaggccttggcaatgaaccacgattcctgatccttctattcacaacctcagaatccgattcattttctgatactgattccagtacttcatcgtgatgat |
35828517 |
T |
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| Q |
319 |
catcgacctttgctac |
334 |
Q |
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| T |
35828516 |
catcgacctttactac |
35828501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 4956112 - 4956323
Alignment:
| Q |
21 |
cttgaaccctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttggcactgatg |
120 |
Q |
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| T |
4956112 |
cttgtaccttccaagctaaccctgcaatccttcttcctcacagtaaaactaaccaattgagcaatctcctccaattttgatatgatctttgaaaccggtg |
4956211 |
T |
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| Q |
121 |
cactagacacaaaccttgcctcatcacccttttcctcaaataaaccagaaagatcaaaaccttgcgaaaacgatataatatcaaaagcattcaaacttgc |
220 |
Q |
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| T |
4956212 |
cagcagtcacgatcctattttcatctcctttttcctcaaacaaaccagaaagatcaaaaccaggtgagaatgaaataatgtcaaaagcattcaaactagc |
4956311 |
T |
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| Q |
221 |
aggccttggcaa |
232 |
Q |
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||| || ||||| |
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| T |
4956312 |
aggtctaggcaa |
4956323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 2104 - 2194
Alignment:
| Q |
21 |
cttgaaccctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttg |
111 |
Q |
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|||| ||| |||||||||||| ||||||| |||||||||||| | || ||||||| |||| ||| ||||||||||||||||| ||||||| |
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| T |
2104 |
cttgtaccttccaagctaaccctgcaatccttcttcctcacagtaaaactaaccaattgagcaatctcctccaattttgatatgatctttg |
2194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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