View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_16 (Length: 322)
Name: NF3706_low_16
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 45283685 - 45283383
Alignment:
| Q |
1 |
tgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattatgtgccaaaacgcacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45283685 |
tgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattatgtgccaaaactcacaa |
45283586 |
T |
|
| Q |
101 |
gaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtgaaggcagccaccgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283585 |
gaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtgaaggcagccaccgaca |
45283486 |
T |
|
| Q |
201 |
atgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283485 |
atgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgca |
45283386 |
T |
|
| Q |
301 |
att |
303 |
Q |
| |
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||| |
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|
| T |
45283385 |
att |
45283383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 45275438 - 45275142
Alignment:
| Q |
7 |
catcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattatgtgccaaaacgcacaagaccaa |
106 |
Q |
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||||||||||||||||| | ||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275438 |
catcggtgttgttgtcgacattcacaaaaatggtaaagaccctgaggttcaaactcaacaaagaaatcttagaattatgtgccaaaacgcacaagaccag |
45275339 |
T |
|
| Q |
107 |
aaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtgaaggcagccaccgacaatgtca |
206 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
45275338 |
aaactctgccatgaaactcttagctctgtgcatggcgccgatgccgctgaccctaaggcatacatagcagccgccgtgaaggcagccactgacaatgtca |
45275239 |
T |
|
| Q |
207 |
ttaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgcaatt |
303 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45275238 |
tgaacgcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaatt |
45275142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 45271905 - 45271609
Alignment:
| Q |
7 |
catcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattatgtgccaaaacgcacaagaccaa |
106 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45271905 |
catcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaaggttcaaactcaacaaagaaatcttagaattatgtgccaaaacgcacaagaccag |
45271806 |
T |
|
| Q |
107 |
aaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtgaaggcagccaccgacaatgtca |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
45271805 |
aaactctgtcatgacactcttagctctgtgcgtggcgccgatgccgctgaccctaaggcatacatagcagcagccgtgaaggcagccactgacaatgtca |
45271706 |
T |
|
| Q |
207 |
ttaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgcaatt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
45271705 |
ttaaggcctttaacatgagtgaaaggctcaccactgagtatggaaagaaaaatggtgccaagatggctcttgatgactgcaaagacttgatgcaatt |
45271609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 45295073 - 45294771
Alignment:
| Q |
1 |
tgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattatgtgccaaaacgcacaa |
100 |
Q |
| |
|
|||||||||||| || ||| ||| |||| |||||||||||||||||| |||||| |||||||||||||| |||| | ||||||||||||| ||| | |
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| T |
45295073 |
tgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctgaggttaaaactcaacaaagatctcttcaagttatgtgccaaaatgcagat |
45294974 |
T |
|
| Q |
101 |
gaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtgaaggcagccaccgaca |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| | || ||||||||||| |||| |
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| T |
45294973 |
gaccaaaaactctgccatgaaacacttagctctgtgcgtggcgccgacgccgctgaccctaaggcatacatagcagccgctgtaaaggcagccactgaca |
45294874 |
T |
|
| Q |
201 |
atgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
45294873 |
atgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgca |
45294774 |
T |
|
| Q |
301 |
att |
303 |
Q |
| |
|
||| |
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|
| T |
45294773 |
att |
45294771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 45304033 - 45303731
Alignment:
| Q |
1 |
tgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattatgtgccaaaacgcacaa |
100 |
Q |
| |
|
|||||||||||| || ||| ||| |||| |||||||||||||||||| |||||| |||||||||||||| |||| | ||||||||||||| ||| | |
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|
| T |
45304033 |
tgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctgaggttaaaactcaacaaagatctcttcaagttatgtgccaaaatgcagat |
45303934 |
T |
|
| Q |
101 |
gaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtgaaggcagccaccgaca |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| | || ||||||||||| |||| |
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|
| T |
45303933 |
gaccaaaaactctgccatgaaacacttagctctgtgcgtggcgccgacgccgctgaccctaaggcatacatagcagccgctgtaaaggcagccactgaca |
45303834 |
T |
|
| Q |
201 |
atgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
45303833 |
atgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgca |
45303734 |
T |
|
| Q |
301 |
att |
303 |
Q |
| |
|
||| |
|
|
| T |
45303733 |
att |
45303731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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