View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_17 (Length: 311)
Name: NF3706_low_17
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 17899263 - 17899405
Alignment:
| Q |
21 |
caagtatattccatagctgatatgcatgcgtacacgtcacggagcacgtgcagaacatactcattttcattcctacaacatggacaagtgggtgatatac |
120 |
Q |
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| T |
17899263 |
caagtatattccatacctgatatacatgcgtaca-gtcacagagcacgtgcagaacatactcattttcattcctacaacatggacaagtgggtgatatac |
17899361 |
T |
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| Q |
121 |
ccaccgccatctactttggcggcagttagtaagaatacatccat |
164 |
Q |
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| T |
17899362 |
ccaccgccatctactttggcggcagttagtaagaatacatccat |
17899405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 17901387 - 17901523
Alignment:
| Q |
162 |
catgagccactaaccacttgaaaatttgaatacgatgtgttccccttcatttccattgtacttgtcaatccccctccgcaaaaacatgatttgaaacaaa |
261 |
Q |
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| T |
17901387 |
catgagccattaaccacgtgaaaatttgaacacgatgcattccccttcatttccatagtacttgtccatccccctccgcaataacatgatttgaaacaag |
17901486 |
T |
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| Q |
262 |
taaatcgtaagcactcttaacggaaaattgatgagta |
298 |
Q |
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| T |
17901487 |
taaatcgtaagcactcttgacggagaattgatgagta |
17901523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 42161796 - 42161915
Alignment:
| Q |
80 |
ctcattttcattcctacaacatggacaagtgggtgatataccca-ccgccatctactttggcggcagttagtaagaatacatccatgagccactaaccac |
178 |
Q |
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| T |
42161796 |
ctcatttgcattcccacaacaaggacaagtaggcgaaattcctatcccccacctacttcgacggtagttagtaagaatacgaccatgagccactaaccac |
42161895 |
T |
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| Q |
179 |
ttgaaaatttgaatacgatg |
198 |
Q |
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| T |
42161896 |
atgaaaatttgaataagatg |
42161915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 292
Target Start/End: Complemental strand, 43691039 - 43690861
Alignment:
| Q |
113 |
tgatatacccaccgccatctactttggcggcagttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtgttccccttcatt |
212 |
Q |
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| T |
43691039 |
tgatatacccacccccatctacttcggcagtagttagtcagaatatgtctatgagcaactaaccacattaaagtttgaatatgatgtgatcccctccaat |
43690940 |
T |
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| Q |
213 |
tccattgtacttgtcaatccccctccgcaaaaacatgatttgaaacaaataaatcgtaagcactcttaacggaaaattga |
292 |
Q |
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| T |
43690939 |
tccatagaacttctcaatccccttcag-agtaacacgatttgaaacaaataaatcgtaaacactcatgacggagaattga |
43690861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 45753481 - 45753549
Alignment:
| Q |
144 |
agttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtgttccccttcatt |
212 |
Q |
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| T |
45753481 |
agtttgtaagaatacgaccatgagctactaaccacatgaaagtttgaatacgatgtggtcccctccatt |
45753549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 46910957 - 46910901
Alignment:
| Q |
144 |
agttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtg |
200 |
Q |
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| T |
46910957 |
agtttgtaagaatacaaccatgagcaactaaccacatgaaagtttgaatacgatgtg |
46910901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 26207911 - 26207855
Alignment:
| Q |
144 |
agttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtg |
200 |
Q |
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| T |
26207911 |
agttagtgagaatacgaccgtgtgccactaaccacatgaaaatttgaatacgatgtg |
26207855 |
T |
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