View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_18 (Length: 309)
Name: NF3706_low_18
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 56232860 - 56233153
Alignment:
| Q |
1 |
caaattactatgttctctggtactccttatcattgtgaagatataaatatcttggatttcaactatcctacaataacaatacctaaactctatgggtcag |
100 |
Q |
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| T |
56232860 |
caaattactatgttctctggtactccttatcattgtgaagatataaatatcttggatttcaactatcctacaataacaatacctaaactctatgggtcag |
56232959 |
T |
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| Q |
101 |
ttactttgagtaggaagctgaaaaatgttggaccaccaggcacatacactgcaagcctccgtgtacccgttggactttccatatcagtgcagcctaagaa |
200 |
Q |
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| T |
56232960 |
ttactttgagtaggaagctgaaaaatgttggaccaccaggcacatacactgcaagcctccgtgtacccgttggactttccatatcagtgcagcctaagaa |
56233059 |
T |
|
| Q |
201 |
gttgaaatttgacaaaattggtgaagagaagagttttagtttgacaattgaagttactagatcaggtatggctactgtatttggaggcctaact |
294 |
Q |
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| T |
56233060 |
gttgaaatttgacaaaattggtgaagagaagagttttagtttgacaattgaagttactagatcaggtatggctactgtatttggaggcctaact |
56233153 |
T |
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Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 39190807 - 39191100
Alignment:
| Q |
1 |
caaattactatgttctctggtactccttatcattgtgaagatataaatatcttggatttcaactatcctacaataacaatacctaaactctatgggtcag |
100 |
Q |
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||||||| |||||||| |||||| | |||||||||| | |||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
39190807 |
caaattagcatgttctccggtactaatcatcattgtgatggtataaacattctggatttcaactatcctacaataacaatacctatactctatggttcag |
39190906 |
T |
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| Q |
101 |
ttactttgagtaggaagctgaaaaatgttggaccaccaggcacatacactgcaagcctccgtgtacccgttggactttccatatcagtgcagcctaagaa |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
39190907 |
ttactttgagtcggaagctgaaaaatgttggaccaccaggcacttacactgcaagcctccgtgtacctgctggactttcgatatcagtgcagcctaagaa |
39191006 |
T |
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| Q |
201 |
gttgaaatttgacaaaattggtgaagagaagagttttagtttgacaattgaagttactagatcaggtatggctactgtatttggaggcctaact |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39191007 |
gttgaaatttgacaaaattggtgaagagaagagttttaatttgacaattgaagttactagatcaggtggggctactgtatttggaggcctaact |
39191100 |
T |
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