View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_2 (Length: 789)
Name: NF3706_low_2
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 5 - 478
Target Start/End: Complemental strand, 7790978 - 7790505
Alignment:
| Q |
5 |
ggtagattattctcatccatacacaactagtattgtttaggtggaaatacttgacatacgcactcattttgaaaacaagtagtaacacctcctggcgctc |
104 |
Q |
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| T |
7790978 |
ggtatattattctcatccatacacaactagtattgtttaggtggaaatacttgacatacacactcatgttgaaaacaagtagtaacacctcccggcgctc |
7790879 |
T |
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| Q |
105 |
tattacaatcagggaggatacaattaatacaatcactgtcacttttgcaggatgaacaattgccattatcatttgtatgaatcagagaggatacaatttc |
204 |
Q |
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| T |
7790878 |
tattacaatcagggaggatacaattaatacaatcactgtcacttttgcaggatgaacaattgccattatcatttgtatgaatcagagaggatacaatttc |
7790779 |
T |
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| Q |
205 |
actattcattcttccttctacataatccatgcacatatctgcatacataaacaatacatgaaatttattagaacaatgtttttatgtaacatgtgaaatt |
304 |
Q |
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| T |
7790778 |
actattcattcttccttctacataatccatgcacatatctgcatacataaacaatacatgaaatttattagaacaatgtttttatgtaacatgtgaaatt |
7790679 |
T |
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| Q |
305 |
tatatttgatgtatcatttgatgaaaaataaatcaaaacaaacctgaggaaatgattaataaagcaatcaacaatgtgaaactgagaggtgaatgtgtcg |
404 |
Q |
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| T |
7790678 |
tatatttgatgtatcatttgatgaaaaataaatcaaaacaaacctgaggaaatgattaacaaagcaatcaacaatgtgaaactgagagctgaatgtgtcg |
7790579 |
T |
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| Q |
405 |
tggtagttttcatctttgctataacacatgtgttctcctcggaaatgtttatataggcaaatgatttgaacacc |
478 |
Q |
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| T |
7790578 |
tggtagttttcatctttgctataacacatatgttgtcctggtaaatgtttatataggcaaatgatttgaacacc |
7790505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 620 - 770
Target Start/End: Complemental strand, 7790362 - 7790212
Alignment:
| Q |
620 |
gttaaaaattagttgaagatgagctaggttcaaggttcaacttttgtaaacgcttttttgacaaattaattatgatatcttaaagcnnnnnnnngaaata |
719 |
Q |
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| T |
7790362 |
gttaaaaattagttgaagatgagctaggttcaaggttcaacttttgtaaacgcttttttgacaaattaattatgatatcctaaagcaaaaaaaagaaata |
7790263 |
T |
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| Q |
720 |
atatctcaattacaattcatatccacttaaaattctctttattatgatgtt |
770 |
Q |
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| T |
7790262 |
atatctcaattacaattcatatccacttaaaatgctctttattatgatgtt |
7790212 |
T |
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