View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_22 (Length: 275)
Name: NF3706_low_22
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 26662111 - 26661867
Alignment:
| Q |
13 |
aatatcaatattccctccgatcacatatataaaacgttctcacatcctttaagaaaattagttaacttcatttgatgttctcaaagtaacagaaaaagta |
112 |
Q |
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| T |
26662111 |
aatatcaatattccctccgatcatatatataaaacgttctcacatcctttaagaaaattagttaacttcatttgatgttctcaaagtaacagaaaaagta |
26662012 |
T |
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| Q |
113 |
actgcattctctaaaatacctgtcatgagaagcactatagtggttttggggttcagcactctgcacccttgtctaagatttaacgacatagattagatgt |
212 |
Q |
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| T |
26662011 |
attgcattctctaaaatacctgtcatgagaagcactatagtggttttggggttcagcactctgcacccttgtctaagatttaacgacatagattagatgt |
26661912 |
T |
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| Q |
213 |
tagcacaaacgaaaaatagagacggaagtggcagtcactcacctc |
257 |
Q |
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| T |
26661911 |
tagcacaaacgaaaaatagagacggaagtggcagtcactcacctc |
26661867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 40269923 - 40270000
Alignment:
| Q |
51 |
ctcacatcctttaagaaaattagttaacttcatttgatgttctcaaagtaacagaaaaagtaactgcattctctaaaa |
128 |
Q |
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| T |
40269923 |
ctcacaccctttaagaaaagtagtcaacttcatttaattttctcaaagtaatagaaaaagtagttgtattctctaaaa |
40270000 |
T |
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