View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_23 (Length: 269)
Name: NF3706_low_23
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 3767398 - 3767159
Alignment:
| Q |
20 |
atttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattttgttcgtcc |
119 |
Q |
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| T |
3767398 |
atttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattttgttcgtcc |
3767299 |
T |
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| Q |
120 |
aatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttctatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3767298 |
aatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttctatc |
3767199 |
T |
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| Q |
220 |
gtagttattccaccatcattaaactctaacactgcctttg |
259 |
Q |
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| T |
3767198 |
gtagttattccaccatcattaaactccaacactgcctttg |
3767159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 3781373 - 3781164
Alignment:
| Q |
29 |
tcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattttgttcgtccaatagatcg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
3781373 |
tcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagacactttcgattttgttcgtccgatagatcg |
3781274 |
T |
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| Q |
129 |
caagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttctatcgtagttatt |
228 |
Q |
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| T |
3781273 |
caaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatgacgtcttgagtggaaaaaatccaacttcggttgcaattatt |
3781174 |
T |
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| Q |
229 |
ccaccatcat |
238 |
Q |
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|||||||||| |
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| T |
3781173 |
ccaccatcat |
3781164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 3777057 - 3776874
Alignment:
| Q |
29 |
tcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattttgttcgtccaatagatcg |
128 |
Q |
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|||||||||||||||||||||| || ||||| ||||||||| || ||||||| || ||||||| |||| || ||||||||||||||||||||||||| |
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| T |
3777057 |
tcactttgttcttcttccttcttatctcttgtaacacactcacttcttcaac---attagaaaaagaagatacctttgattttgttcgtccaatagatcg |
3776961 |
T |
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| Q |
129 |
caagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttc |
215 |
Q |
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| T |
3776960 |
caagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatgacatagttagtggaaaaaatccaacttc |
3776874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 3762985 - 3762802
Alignment:
| Q |
29 |
tcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgattttgttcgtccaatagatcg |
128 |
Q |
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|||||||||||||||||||||| | ||||||||||| ||| | | | | ||||||||||| |||| || |||||||||||||||||||||| || |
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| T |
3762985 |
tcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgattttgttcgtccaatagaccg |
3762886 |
T |
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| Q |
129 |
caagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctac |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||| | ||| || |||||||||||| | |||||||| |||||||| |
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| T |
3762885 |
caagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatgacatactaagtggaaataaccctac |
3762802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 3752006 - 3751823
Alignment:
| Q |
29 |
tcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaac------ttcatcagaaaaacaagacacagttgattttgttcgtccaat |
122 |
Q |
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||||||||||||||||||||||| | ||||||||||| ||| || | || | |||| |||||||||||| || ||||||||||||||||||| |
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| T |
3752006 |
tcactttgttcttcttccttctcctctcttgcaacactctcacttcaacatcattacaatcattagaaaaacaagaaacttttgattttgttcgtccaat |
3751907 |
T |
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| Q |
123 |
agatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaa |
206 |
Q |
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||| ||||| |||||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||||| || ||||||| ||||| |
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| T |
3751906 |
agaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaa |
3751823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 3746107 - 3745997
Alignment:
| Q |
105 |
tgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaa |
204 |
Q |
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||||||||||||| ||||||| | ||| |||||| ||||||||| | ||||||||||||||||||| ||| | |||||||||||| ||||||||||| |
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| T |
3746107 |
tgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaa |
3746008 |
T |
|
| Q |
205 |
aaccctacttc |
215 |
Q |
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||||||||||| |
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| T |
3746007 |
aaccctacttc |
3745997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 3755789 - 3755681
Alignment:
| Q |
104 |
ttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaa |
203 |
Q |
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|
|||| ||||||||||| ||||| ||||| || ||| ||||||| ||||||||| ||||||||||||| ||| || ||||| ||||||||||||||||| |
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| T |
3755789 |
ttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaa |
3755693 |
T |
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| Q |
204 |
aaaccctacttc |
215 |
Q |
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|||||||||||| |
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| T |
3755692 |
aaaccctacttc |
3755681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 3771569 - 3771439
Alignment:
| Q |
82 |
tcatcagaaaaacaagacacagttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttatt |
181 |
Q |
| |
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||||||||||| | ||||| |||| ||||||||||| ||||| ||||| || ||| ||||||| ||||||||| ||||||||||||| ||| || | |
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| T |
3771569 |
tcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctact |
3771473 |
T |
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| Q |
182 |
ggcatgacatagtgagtggaaaaaaccctacttc |
215 |
Q |
| |
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|||| || |||| |||||||||||||||| |||| |
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| T |
3771472 |
ggcacgagatagcgagtggaaaaaaccctccttc |
3771439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 25985271 - 25985329
Alignment:
| Q |
157 |
aagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccctacttc |
215 |
Q |
| |
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|||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||| |||| |
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| T |
25985271 |
aagctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttc |
25985329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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