View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3706_low_3 (Length: 572)

Name: NF3706_low_3
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3706_low_3
NF3706_low_3
[»] chr4 (11 HSPs)
chr4 (205-562)||(44879562-44879919)
chr4 (1-552)||(44861557-44862119)
chr4 (205-532)||(44848115-44848439)
chr4 (1-167)||(44879374-44879536)
chr4 (333-547)||(44836269-44836483)
chr4 (269-526)||(44897150-44897407)
chr4 (2-65)||(44896825-44896888)
chr4 (21-70)||(44847961-44848010)
chr4 (21-66)||(44836069-44836114)
chr4 (205-294)||(44836166-44836252)
chr4 (104-180)||(44896970-44897047)
[»] chr3 (2 HSPs)
chr3 (341-486)||(12927449-12927594)
chr3 (25-66)||(12927749-12927790)
[»] chr8 (1 HSPs)
chr8 (21-66)||(22637871-22637916)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 205 - 562
Target Start/End: Original strand, 44879562 - 44879919
Alignment:
Q  205 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879562 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 44879661  T
Q  305 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaa 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44879662 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaa 44879761  T
Q  405 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879762 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 44879861  T
Q  505 cttaggtaagaatataaccatttcactctctgttctttgcattttctcaccctctctg 562  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  44879862 cttaggtaagaatttaaccatttcactctctgttctttgcattttctcaccctgtctg 44879919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 44861557 - 44862119
Alignment:
Q  1 ttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaagaaatatctgaacagatagatatatgatca 100  Q
    ||||||||| || |||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||    |||||||||| |||    ||| | ||    
T  44861557 ttagcttctctcctgggcggtctgttctttacttgggtcgtcctgcaactttttccggtaagtgcagaaa----tatctgaacaaata----tatcagca 44861648  T
Q  101 agaaatacgtagctaatggccaattttgatttttcaaatagctgtgatattttttatgtccctaaatcaactttatat--gtccatagccatgatgaaag 198  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||  ||||| ||||||| ||||||||  |||   ||||||||||||||    
T  44861649 agaaataagtagctaatggccaattttgagttttcaaatagctctgatattcttgctgtccataaatcacctttatatatgtctgcagccatgatgaaag 44861748  T
Q  199 taaacttt----------------ttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaac 282  Q
    ||||||||                ||||||||||||||||||| |||||  ||||||||  |||| |||||||||| |||||||||||| ||||||||||    
T  44861749 taaactttcaattcaatttggattttctgctcatggaacaatacatgactagtattcaatttcaacaattgtatctaacatccaataat-caaacacaac 44861847  T
Q  283 agaatatatgttcaagtgtatttatctgttcaacataattaagctctatgt--gcattttatgtaggttattctgacatcactggtttatgagaagcagc 380  Q
    |||||| |||||  ||||||||||||| |||||||  | ||| |||||| |  |||||||||| |||||||||||||||||||||||||||||||||| |    
T  44861848 agaataaatgttttagtgtatttatctcttcaacacgagtaaactctatatatgcattttatgcaggttattctgacatcactggtttatgagaagcaac 44861947  T
Q  381 aaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgtt 480  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| | |||||| || ||    
T  44861948 aaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggttgatttcatatggatattttcttgccttatctgtgatctacatatt 44862047  T
Q  481 gtgttttgtgatgttcggctcatccttaggtaagaatataaccatttcactctctgttctttgcattttctc 552  Q
    |||||| ||||| |||||||||  |||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  44862048 gtgtttcgtgatattcggctcagtcttaggtaagaatataactatttcattctctgttcttggcattttctc 44862119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 205 - 532
Target Start/End: Original strand, 44848115 - 44848439
Alignment:
Q  205 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 304  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||   |||||||| |||| |||||||||||||  | ||||||    
T  44848115 ttttctgctcatggaacaatacatgactcgtattcaaagtcaacaattgtatctaacatc---taatgcaagcacagcagaatatatgttgtaatgtatt 44848211  T
Q  305 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaa 404  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44848212 tatctgttcaacatgattaacctccatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaa 44848311  T
Q  405 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 504  Q
    ||||||||||||||||||||||||||||| ||||| |||| || ||||||||||| ||||| | |||||| || || |||||||||| ||| ||||||      
T  44848312 tgcatggtcttggtgacgggccatattggatgatttcatacggctattttcttgccttatcggtgatctacattttatgttttgtgacgtttggctcagt 44848411  T
Q  505 cttaggtaagaatataaccatttcactc 532  Q
    ||| ||||||||||||||||||| ||||    
T  44848412 ctttggtaagaatataaccatttaactc 44848439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 44879374 - 44879536
Alignment:
Q  1 ttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaagaaatatctgaacagatagatatatgatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  44879374 ttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaagaaatatctgaac----agatatatgatca 44879469  T
Q  101 agaaatacgtagctaatggccaattttgatttttcaaatagctgtgatattttttatgtccctaaat 167  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44879470 agaaataagtagctaatggtcaattttgatttttcaaatagctgtgatattttttatgtccctaaat 44879536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 333 - 547
Target Start/End: Original strand, 44836269 - 44836483
Alignment:
Q  333 tgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattg 432  Q
    |||||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  44836269 tgcattttatataggttgttttgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgatgggccatattg 44836368  T
Q  433 gttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatttcactc 532  Q
    | ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||  ||| |||||||||| ||  |||| ||||    
T  44836369 gatgattacatatggttattttcttgccttatcagcgatatacatgttgtgttttgtgatattcggctcagtcttgggtaagaataaaattatttgactc 44836468  T
Q  533 tctgttctttgcatt 547  Q
    ||| ||||| |||||    
T  44836469 tctattcttggcatt 44836483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 269 - 526
Target Start/End: Original strand, 44897150 - 44897407
Alignment:
Q  269 aatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggttt 368  Q
    |||||||||||  || |||| |||||  ||||||||| ||| || || || | ||||||||||   ||||| ||||||||| | |||||||||||| |||    
T  44897150 aatgcaaacactgcataatagatgttttagtgtatttttctttttaatatgagtaagctctatacacatttaatgtaggttgtgctgacatcactgattt 44897249  T
Q  369 atgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagc 468  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||| |||||||     
T  44897250 atgagaagcaacaaaaattgagaatcatgatgaaaatgcatggtcttggtgatggaccatattggatgattacatatggttatttccttgccttatcagt 44897349  T
Q  469 gatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatt 526  Q
    |||||| |||||||| |||||||| || ||||||  | ||||||||||||||||||||    
T  44897350 gatctacatgttgtgctttgtgatatttggctcagtcctaggtaagaatataaccatt 44897407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 44896825 - 44896888
Alignment:
Q  2 tagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgc 65  Q
    |||||||| || |||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  44896825 tagcttctctcctgggcgttctgttctttacatgggtcgttctgcaactttttccggtaagtgc 44896888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 44847961 - 44848010
Alignment:
Q  21 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaa 70  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  44847961 tctgttctttacatgggtcgtcctgctactttttccggtaagtgcagaaa 44848010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 44836069 - 44836114
Alignment:
Q  21 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 66  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  44836069 tctgttctttacatgggttgtcctgcaactttttccagtaagtgca 44836114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 44836166 - 44836252
Alignment:
Q  205 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgtt 294  Q
    ||||||||||||||||||||| || || | | ||||||||||||||| ||| || |||||   ||||||| ||||||||||||| |||||    
T  44836166 ttttctgctcatggaacaatacattactcatcttcaaagtcaataatcgtacctaacatc---taatgcacacacaacagaatagatgtt 44836252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 44896970 - 44897047
Alignment:
Q  104 aatacgtagctaatggccaattttgatttttcaaatagctgtgatatt-ttttatgtccctaaatcaactttatatgt 180  Q
    |||| ||||||| ||||| |||||||||||| |||||||| ||||||| ||   ||||||||||||| ||||||||||    
T  44896970 aataggtagctattggccgattttgatttttgaaatagctttgatattcttacctgtccctaaatcagctttatatgt 44897047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 486
Target Start/End: Complemental strand, 12927594 - 12927449
Alignment:
Q  341 atgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgatta 440  Q
    ||||||||| | || |||||| | ||||| |||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||||||||||| | |||     
T  12927594 atgtaggttgtcctcacatcattagtttacgagaagcaacaaaatttgagaatcatgatgaaaatgcatggtctcggtgatgggccatattggattattt 12927495  T
Q  441 catatggttattttcttgcattatcagcgatctatatgttgtgttt 486  Q
    | ||  |||||||||||||  |||||   ||||| |||||||||||    
T  12927494 cttacagttattttcttgccatatcaattatctacatgttgtgttt 12927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 12927790 - 12927749
Alignment:
Q  25 ttctttacatgggtcgtcctgcaactttttcctgtaagtgca 66  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  12927790 ttctttacatgggtcatcttgcaactttttcctgtaagtgca 12927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 22637871 - 22637916
Alignment:
Q  21 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 66  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  22637871 tctgttctttacatgggttgtcctgcaactttttccggtaagtgca 22637916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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