View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_30 (Length: 205)
Name: NF3706_low_30
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 45604497 - 45604322
Alignment:
| Q |
18 |
agagactcatcaaagcaccttaccaaaactattgtttgctgaatggctttcattggatcatgttaataata------ggaactcttcaaattcagttgaa |
111 |
Q |
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| T |
45604497 |
agagactcatcaaagcaccttaccaaaactattgtttgctgaatggctttcattggatcatgttaataataataataggaactcttcaaattcagttgaa |
45604398 |
T |
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| Q |
112 |
tctttggtcatgagaaatggatttgatcaaaattcagcttttcaagaagttacaatgcaagaaggacccttcaatg |
187 |
Q |
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| T |
45604397 |
tctttggtcatgagaaatggatttgatcaaaattcagcttttcaagaagttacaatgcaagaaggacccttcaatg |
45604322 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 20070142 - 20070264
Alignment:
| Q |
37 |
ttaccaaaactattgtttgctgaatggctttcattggatcatgttaataataggaactcttcaaattcagttgaatctttggtcatgagaaatggatttg |
136 |
Q |
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| T |
20070142 |
ttaccaaaacttttattttctgagtggctttcactagatcaagtaaatggttgcaactctctaaattcagatgattctttggtcttgaaaaatggctatg |
20070241 |
T |
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| Q |
137 |
atcaaaattcagcttttcaagaa |
159 |
Q |
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| T |
20070242 |
atcaaaatttaatttttcaagaa |
20070264 |
T |
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