View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_6 (Length: 472)
Name: NF3706_low_6
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 35835759 - 35836211
Alignment:
| Q |
8 |
tgagatgaaggtaactaatcaactaagcaaaacttgtatgttacaaaggaaagcaaaaataaatgcagcagttggtacaaagataacatcagggtctctc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35835759 |
tgagatgaaggtaactaatcaactaagcaaaacttgtatgttacaaaggaaagcaaaaataaatgcagcagttggtacaaagataacatcagggtctctc |
35835858 |
T |
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| Q |
108 |
at-tttctatgaatccttccttacaacccttccctcaacaaatacataaccaagctcagtatcttcttctcagaggattcccaacactatggtttgagct |
206 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35835859 |
atccttctatgaatccttccttacaacccttccctcaacaaatacataaccaagctcagtatcttcttctcagaggattcccaacactatggtttgagct |
35835958 |
T |
|
| Q |
207 |
gaaagnnnnnnnnnntcacacccacataaccaattaactaactttttcaaaccctgaa----nnnnnnnnatgcaaagctgataacaaagtaacaaacca |
302 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35835959 |
gaaaaaaaaaaaaaatcatacccacataaccaattaactaactttttcaaaccctgaattttttttttttatgcaaagctgataacaaagtaacaaacca |
35836058 |
T |
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| Q |
303 |
aaaccataacaatgaagaaacatggaataaccctattagcaagcaacc-tttttagagtatcataaaaatttaattcttttcctaaaagaaagggataaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35836059 |
aaaccataacaatgaagaaacatggaataaccctattagcaagcaaccttttttagagtatcataaaaatttaattcttttcctaaaagaaagggataaa |
35836158 |
T |
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| Q |
402 |
aatctttgtagcatcgacatttctgatcaaatgtatgtccttgtgtctgacac |
454 |
Q |
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||||||||||||||||||||||||||| ||| | || |||||||||||||||| |
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| T |
35836159 |
aatctttgtagcatcgacatttctgatgaaaggcatatccttgtgtctgacac |
35836211 |
T |
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