View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3706_low_7 (Length: 458)
Name: NF3706_low_7
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 54218784 - 54219237
Alignment:
| Q |
1 |
catagtagaaaaactttttcttgtgcatctcaaagtaatttgcactcctgtgctcgagttgcatggaatcatactctagtttcagaataaagttagttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54218784 |
catagtagaaaaactttttcttgtgcatctcaaagtagtttgcactcctgtgcttgagttgcatggaatcatactctagtttcagaataaagttagttga |
54218883 |
T |
|
| Q |
101 |
gtaatttgaattccttctcatacagaacaaaatataagaaaggaaaaaa---------------ggaaattcagtgaaatttgaagacgcaacttcccag |
185 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54218884 |
gtaatttgaattccttctcataaagaacaaaatataagaaaggaaaaaaaaaaaaaaaaaaaaaggaaattcagtgaaatttgaagacgcaacttcccag |
54218983 |
T |
|
| Q |
186 |
gcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatctcctctagaactgtgtgc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54218984 |
gcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatcgcctctagaactgtgg-- |
54219081 |
T |
|
| Q |
286 |
cattttctgtcaaacactttaccaattggatttcaatttcatctccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaa |
385 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54219082 |
cattttctgtcaaacactttaacaattggatttcaatttcatctccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaa |
54219181 |
T |
|
| Q |
386 |
agaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctgaacaagaa |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54219182 |
agaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctgaacaagaa |
54219237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 175 - 417
Target Start/End: Original strand, 31217373 - 31217613
Alignment:
| Q |
175 |
caacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatctcctcta |
274 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||| |||||||||| | ||| ||||| | ||| | ||| | ||||| |||||| || |
|
|
| T |
31217373 |
caacttcccatgcctaaagcttgcaattggttcctcacatcagccagcttcttcgatttttttgatagatatccagtacagtaaatgttcatctccctta |
31217472 |
T |
|
| Q |
275 |
g-aactgtgtgccattttctgtcaaacactttaccaattggatttcaatttcatctccatcaaaatctgaaaaagaacataatttgagagaagatttgat |
373 |
Q |
| |
|
||| ||| |||||||| |||| |||| |||||| |||||| |||||||||| ||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
31217473 |
ataac---gtgacattttctaacaaaaacttcaccaatctgatttcggcttcatctccacgaaaatctgaaatatcacatgatttgagagaagatttgaa |
31217569 |
T |
|
| Q |
374 |
acagcaaggcaaagaatctgatgtcaagtcttcattatccaagg |
417 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
31217570 |
acagcaaggcagtgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 17595368 - 17595307
Alignment:
| Q |
335 |
aaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
396 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| ||| ||| ||||| || |||| ||||| |
|
|
| T |
17595368 |
aaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University