View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3706_low_9 (Length: 422)
Name: NF3706_low_9
Description: NF3706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3706_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 39937609 - 39938003
Alignment:
| Q |
19 |
agcaggcctcttgagaaaccagaaacccgccagtcaggtaaattgccttatcttagtattttgcaggatttggttagtttattattctgtgttttaatga |
118 |
Q |
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| T |
39937609 |
agcaggcctcttgagaaaccagaaacccgccagtcaggtaaattgccttatcttagtattttgcaggatttggttagtttattattctgtgttttaatga |
39937708 |
T |
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| Q |
119 |
ttttgatatacagttactgtgttcctgtgtcgtgagcttctggagcacattaacttccagaaccaatttaaccttcctgtgtccaagaaccaatttaacc |
218 |
Q |
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| T |
39937709 |
ttttgatatacagttactgtgttcttgtgtcatgagcttctggagcacattaacttccagaaccaatttaaccttcctgtgtccaagaaccaatttaatc |
39937808 |
T |
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| Q |
219 |
ctttaattcaaatttgtactgaatctttattatatatcaaatatggcttagtatctcaannnnnnncttgattatgttcaggagataagtgattatttga |
318 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39937809 |
cttcaattcaaatttgtactgaatctttattatatatcaaatatggcttagtatctcaatttttttcttgattatgttcaggagataagtgattatttga |
39937908 |
T |
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| Q |
319 |
tagtttcaatcaagggctggctattcagatggtgcttcttattattgtatattatctgatactactagctctcaatatggtactactagtattat |
413 |
Q |
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| T |
39937909 |
tagtttcaatcaagggctggctattcagatggtgcttcttattattgtatattatctgatactactagctctcaatatggtactactagtattat |
39938003 |
T |
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