View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3707_high_20 (Length: 250)

Name: NF3707_high_20
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3707_high_20
NF3707_high_20
[»] chr6 (9 HSPs)
chr6 (19-174)||(1826579-1826734)
chr6 (116-196)||(806545-806625)
chr6 (116-173)||(14153354-14153411)
chr6 (208-250)||(1826539-1826581)
chr6 (117-171)||(4321761-4321815)
chr6 (114-171)||(31522558-31522615)
chr6 (114-171)||(35060918-35060975)
chr6 (165-196)||(5076516-5076547)
chr6 (116-194)||(2559619-2559697)
[»] chr7 (18 HSPs)
chr7 (116-196)||(28138759-28138839)
chr7 (116-196)||(28139433-28139513)
chr7 (120-193)||(23344444-23344517)
chr7 (116-194)||(26009369-26009447)
chr7 (115-196)||(31853271-31853350)
chr7 (122-187)||(34116025-34116090)
chr7 (116-196)||(31852635-31852715)
chr7 (115-171)||(42548782-42548838)
chr7 (115-173)||(19931487-19931545)
chr7 (115-193)||(41957567-41957645)
chr7 (116-173)||(26011974-26012031)
chr7 (115-165)||(33839471-33839521)
chr7 (116-171)||(42548161-42548216)
chr7 (116-173)||(38790884-38790942)
chr7 (116-165)||(8525540-8525589)
chr7 (116-181)||(25428731-25428796)
chr7 (114-163)||(36325617-36325666)
chr7 (119-171)||(5195-5247)
[»] chr2 (17 HSPs)
chr2 (116-196)||(12965049-12965129)
chr2 (116-195)||(19984702-19984781)
chr2 (115-188)||(25389856-25389929)
chr2 (116-188)||(22787991-22788063)
chr2 (116-192)||(38226219-38226295)
chr2 (116-191)||(28360185-28360260)
chr2 (114-189)||(22727660-22727735)
chr2 (114-196)||(494963-495044)
chr2 (116-171)||(8273245-8273300)
chr2 (116-163)||(31133179-31133226)
chr2 (112-162)||(18387237-18387287)
chr2 (114-163)||(5037297-5037346)
chr2 (116-161)||(20685006-20685051)
chr2 (111-196)||(20686800-20686885)
chr2 (114-171)||(37893031-37893088)
chr2 (116-172)||(494874-494930)
chr2 (116-172)||(2675146-2675202)
[»] chr1 (15 HSPs)
chr1 (113-191)||(5602941-5603019)
chr1 (116-196)||(3792296-3792376)
chr1 (114-174)||(35392124-35392184)
chr1 (116-171)||(37260936-37260991)
chr1 (114-172)||(2094384-2094442)
chr1 (134-196)||(5603159-5603221)
chr1 (113-155)||(27039260-27039302)
chr1 (114-171)||(3792558-3792615)
chr1 (117-173)||(20447024-20447080)
chr1 (117-173)||(20532787-20532843)
chr1 (116-164)||(28476012-28476060)
chr1 (116-171)||(33617644-33617699)
chr1 (116-174)||(5119051-5119109)
chr1 (114-171)||(39650194-39650251)
chr1 (116-196)||(37259311-37259391)
[»] chr5 (18 HSPs)
chr5 (115-196)||(40266586-40266668)
chr5 (114-195)||(25787840-25787921)
chr5 (116-195)||(25760512-25760591)
chr5 (114-173)||(34017640-34017699)
chr5 (114-196)||(25759838-25759920)
chr5 (116-173)||(11135741-11135798)
chr5 (116-172)||(7336106-7336162)
chr5 (116-191)||(40266370-40266446)
chr5 (113-173)||(3458011-3458071)
chr5 (114-189)||(3758920-3758995)
chr5 (116-171)||(22252276-22252331)
chr5 (116-163)||(38739387-38739434)
chr5 (116-194)||(7164177-7164255)
chr5 (127-193)||(18673609-18673675)
chr5 (116-172)||(3759606-3759662)
chr5 (116-188)||(6636908-6636980)
chr5 (117-173)||(7335534-7335590)
chr5 (117-193)||(34708748-34708824)
[»] chr8 (17 HSPs)
chr8 (116-196)||(3588543-3588623)
chr8 (115-195)||(37687311-37687391)
chr8 (114-196)||(9448343-9448425)
chr8 (115-169)||(43640998-43641052)
chr8 (116-172)||(3588340-3588396)
chr8 (114-196)||(1349045-1349127)
chr8 (120-173)||(25497372-25497425)
chr8 (115-167)||(9418586-9418638)
chr8 (116-196)||(24899064-24899144)
chr8 (117-165)||(33228912-33228960)
chr8 (116-172)||(35841397-35841453)
chr8 (116-173)||(1349240-1349297)
chr8 (114-163)||(14087875-14087924)
chr8 (120-173)||(25401192-25401245)
chr8 (167-196)||(33581841-33581870)
chr8 (116-164)||(5967267-5967315)
chr8 (167-195)||(25220738-25220766)
[»] chr3 (18 HSPs)
chr3 (114-173)||(30533899-30533958)
chr3 (115-172)||(3539667-3539724)
chr3 (116-173)||(54528977-54529034)
chr3 (114-190)||(30533218-30533294)
chr3 (116-167)||(39685212-39685263)
chr3 (116-190)||(4969875-4969949)
chr3 (122-196)||(8150305-8150379)
chr3 (115-173)||(40517544-40517602)
chr3 (116-171)||(50663875-50663930)
chr3 (116-171)||(53814584-53814639)
chr3 (116-194)||(33450034-33450112)
chr3 (116-165)||(15040681-15040730)
chr3 (116-161)||(44430418-44430463)
chr3 (116-165)||(53101186-53101235)
chr3 (115-171)||(6162705-6162761)
chr3 (116-192)||(8150169-8150245)
chr3 (117-161)||(13843626-13843670)
chr3 (116-172)||(26998309-26998365)
[»] scaffold0085 (1 HSPs)
scaffold0085 (132-190)||(46599-46657)
[»] scaffold0005 (1 HSPs)
scaffold0005 (117-195)||(269110-269188)
[»] chr4 (14 HSPs)
chr4 (116-190)||(37576543-37576617)
chr4 (114-171)||(33164528-33164585)
chr4 (116-173)||(54208180-54208237)
chr4 (116-171)||(36217870-36217925)
chr4 (125-195)||(40312266-40312336)
chr4 (125-195)||(40322342-40322412)
chr4 (159-188)||(373495-373524)
chr4 (116-173)||(38676939-38676996)
chr4 (116-173)||(47177912-47177969)
chr4 (116-189)||(51719779-51719852)
chr4 (119-171)||(24974169-24974221)
chr4 (167-195)||(31323569-31323597)
chr4 (119-175)||(40312813-40312869)
chr4 (119-175)||(40322889-40322945)
[»] scaffold1063 (1 HSPs)
scaffold1063 (113-180)||(1472-1539)
[»] scaffold0163 (1 HSPs)
scaffold0163 (116-171)||(35776-35831)
[»] scaffold0041 (1 HSPs)
scaffold0041 (115-166)||(23486-23537)
[»] scaffold0325 (1 HSPs)
scaffold0325 (166-196)||(14703-14733)
[»] scaffold0246 (1 HSPs)
scaffold0246 (116-166)||(2881-2931)
[»] scaffold1763 (1 HSPs)
scaffold1763 (116-161)||(397-442)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 1826734 - 1826579
Alignment:
Q  19 gtgagttggtgtgaatgtgtctggtgatgttgggcgcaatgttagactaaagttttagctcaaactcaacattggttgttttatgatagaaatagttgaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1826734 gtgagttggtgtgaatgtgtctggtgatgttgggcgcaatgttagactaaagttttagctcaaactcaacattggttgttttatgatagaaatagttgaa 1826635  T
Q  119 ttctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatact 174  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||||    
T  1826634 ttctgctctttatccaaatgattttgctcatttttaaagtaaatgatcaaaatact 1826579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 806545 - 806625
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||| | ||||||||||| |||  |||||||||||||    
T  806545 gaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaactcacgct 806625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 14153354 - 14153411
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatac 14153411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 1826581 - 1826539
Alignment:
Q  208 actgaacctcctagagcgtgagttaagtcacgttggtttcttt 250  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  1826581 actgaacctcccagagcgtgagttaagtcacgttggtttcttt 1826539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 4321815 - 4321761
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    |||||||||| ||||| |||| |||| ||||||||||||||||||||| ||||||    
T  4321815 aattctgctcattacctaaatagtttcgctcattttcaaagtaaatgatcaaaat 4321761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 31522615 - 31522558
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||| ||||||||||||||  |||||||  |||||||||||||| ||||    
T  31522615 ttgaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaat 31522558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 35060975 - 35060918
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||| ||||||||||| ||  |||||||| ||||||||||| |||||||    
T  35060975 ttgaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaat 35060918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 196
Target Start/End: Original strand, 5076516 - 5076547
Alignment:
Q  165 ccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||||||||||||||||||||||||    
T  5076516 ccaaaatactcctgcgtgagttaactcacgct 5076547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 2559697 - 2559619
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacg 194  Q
    ||||| ||||||||||||||| | |||||||| ||  |||||||||||  || | | ||||| ||||||||||||||||    
T  2559697 gaattttgctctttacccaaacgattttgctcgttcccaaagtaaatgttcatattgctcctacgtgagttaactcacg 2559619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 28138759 - 28138839
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||| ||||||||| ||||||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctgcgtgacttaactcacgct 28138839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 28139513 - 28139433
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    |||||||||| ||||||||||||| ||||| ||||  ||||||||||||||||||| | ||||||||||||||||||||||    
T  28139513 gaattctgctttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcacgct 28139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 23344444 - 23344517
Alignment:
Q  120 tctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcac 193  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||| | ||| | |||||||||||||||||    
T  23344444 tctgctctttacccaaacggttttgctcatttttaaagtaaatgtccatattacccgtgcgtgagttaactcac 23344517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 26009369 - 26009447
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacg 194  Q
    ||||||||||||||||||||| | |||||||||||  |||||||||||||||||||| |||| ||   |||||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactcacg 26009447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 31853350 - 31853271
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    |||||||||||| ||| |||||| |||  ||||||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  31853350 tgaattctgctcattatccaaatagttccgctcatttttaaaataaatgaccaaaata--cctgcgtgagttaactcacgct 31853271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 34116025 - 34116090
Alignment:
Q  122 tgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagtta 187  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||||||  || |||||||||||    
T  34116025 tgctctttacccaaatggatttgctcatttccaaagttaatgaccaaaatgttcttgcgtgagtta 34116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 31852635 - 31852715
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||| ||| ||||| |||||||||| |||||||||||||||  || | ||| ||||||| ||||||||||||||    
T  31852635 gaattctgctcattatccaaacggttttgctcgttttcaaagtaaatgttcatattacccctgcgtaagttaactcacgct 31852715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 42548838 - 42548782
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||| |||||||||    
T  42548838 tgaattctgctcttcccccaaatggtttcgctcattttcaaagtaaaagaccaaaat 42548782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 19931487 - 19931545
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    |||||||||||||||| | |||||||||||||| || |||||||||||||| |||||||    
T  19931487 tgaattctgctctttatctaaatggttttgctcgttctcaaagtaaatgactaaaatac 19931545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 41957645 - 41957567
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcac 193  Q
    |||||| ||||||||||||||| | ||||| |||||  ||||||||||||||||||||   |||||||| |||||||||    
T  41957645 tgaattttgctctttacccaaacgattttgatcattcccaaagtaaatgaccaaaatatctctgcgtgacttaactcac 41957567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 26012031 - 26011974
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||||||||||||| | ||||  ||||| ||||||||||||||||||||||    
T  26012031 gaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatac 26011974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 33839521 - 33839471
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgac 165  Q
    |||||||||||||||| |||||||| || ||||||| ||||||||||||||    
T  33839521 tgaattctgctctttatccaaatggattcgctcattctcaaagtaaatgac 33839471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 42548161 - 42548216
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||| |||||||||| ||||||||||||  ||||||||| | |||||||    
T  42548161 gaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 38790884 - 38790942
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcatttt-caaagtaaatgaccaaaatac 173  Q
    ||||||||||| ||| ||||||||||| ||||||||| ||||||||| | |||||||||    
T  38790884 gaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatac 38790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 8525589 - 8525540
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgac 165  Q
    ||||||||||||||||||||| | | | |||||||| |||||||||||||    
T  8525589 gaattctgctctttacccaaaggttatcgctcatttccaaagtaaatgac 8525540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 25428731 - 25428796
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgt 181  Q
    ||||| ||||||||||||||| |||| ||||||||  ||||||||||  ||||||| | |||||||    
T  25428731 gaattttgctctttacccaaacggttctgctcattcccaaagtaaatatccaaaatgcccctgcgt 25428796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 36325617 - 36325666
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatg 163  Q
    |||||||||||||||||| ||||  ||||||||| || ||||||||||||    
T  36325617 ttgaattctgctctttactcaaacagttttgctcgttctcaaagtaaatg 36325666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 5247 - 5195
Alignment:
Q  119 ttctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    |||||||| |||||||||||| || |||||||  |||||||||||||| ||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaat 5195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 12965049 - 12965129
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||||||||||||| | || |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  12965049 gaattctgctctttacccaaacgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcacgct 12965129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 19984781 - 19984702
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgc 195  Q
    ||||||||||||||||||||| |||| ||||| |||  |||||||||||||||||||| |||||||||||||||||||||    
T  19984781 gaattctgctctttacccaaacggttatgctcgtttctaaagtaaatgaccaaaatacccctgcgtgagttaactcacgc 19984702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 25389929 - 25389856
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaa 188  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| | | ||||||||||||    
T  25389929 tgaattctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaatgcccttgcgtgagttaa 25389856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 22788063 - 22787991
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaa 188  Q
    |||||||||||||||||||||||| |||| |||||  ||||||||||||||||||||| ||| ||||||||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaatacccctacgtgagttaa 22787991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 38226295 - 38226219
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactca 192  Q
    ||||||||||||  ||||||||| |||||| ||||| ||| ||||||||||||||||| |||||||||||| |||||    
T  38226295 gaattctgctctccacccaaatgattttgcccatttccaatgtaaatgaccaaaatacccctgcgtgagtttactca 38226219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 28360260 - 28360185
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactc 191  Q
    ||||||||||||||||||||||| ||||||||||| ||||   ||| ||||||||| | |||||||||||||||||    
T  28360260 gaattctgctctttacccaaatgtttttgctcattctcaagtgaaaagaccaaaatgcccctgcgtgagttaactc 28360185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 22727660 - 22727735
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaac 189  Q
    |||||| ||||||||||||||||| | |||||| |||  |||||||||||||| |||||| ||| |||||||||||    
T  22727660 ttgaatcctgctctttacccaaatagatttgcttattcccaaagtaaatgacccaaatacccctacgtgagttaac 22727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 495044 - 494963
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||| |||||  ||||| | ||||||||||  ||||||||||||||||||| | ||||||| |||||||| |||||    
T  495044 ttgaattctgcgctttattcaaatagatttgctcattgccaaagtaaatgaccaaaatgc-cctgcgtaagttaacttacgct 494963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 8273245 - 8273300
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||| |||||||||||| || |||||||  |||||||||||||| ||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaat 8273300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 31133179 - 31133226
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatg 163  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||||||||    
T  31133179 gaattctgctctttacccaaatcatttcgctcatttttaaagtaaatg 31133226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 18387237 - 18387287
Alignment:
Q  112 agttgaattctgctctttacccaaatggttttgctcattttcaaagtaaat 162  Q
    ||||||||||||||| |||| ||||||||| ||||||||  ||||||||||    
T  18387237 agttgaattctgctcattactcaaatggttctgctcattcccaaagtaaat 18387287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 5037297 - 5037346
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatg 163  Q
    ||||||||||||||||||| ||| ||||||| || ||| |||||||||||    
T  5037297 ttgaattctgctctttaccaaaacggttttgttcgtttccaaagtaaatg 5037346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 20685006 - 20685051
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaa 161  Q
    ||||||||||| ||||||||||||||  ||||||| ||||||||||    
T  20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaa 20685051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 20686885 - 20686800
Alignment:
Q  111 tagttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    |||||||||||||||| |||  |||||| ||  |||||||   |||||||| | ||||||| | |||||||||||||| |||||||    
T  20686885 tagttgaattctgctcgttattcaaatgtttccgctcattcctaaagtaaaagtccaaaatgcccctgcgtgagttaagtcacgct 20686800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 37893088 - 37893031
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||  ||||||||||||||| |||||||  ||||||||| | |||||||    
T  37893088 ttgaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaat 37893031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 494874 - 494930
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    ||||||||||||||||  |||||| ||||||||||  ||||||||| || |||||||    
T  494874 gaattctgctctttacttaaatggatttgctcattcccaaagtaaacgaacaaaata 494930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 2675146 - 2675202
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    |||||||||||||||  ||||| |||||| || || ||||||||||||| |||||||    
T  2675146 gaattctgctctttattcaaatagttttgttcgttctcaaagtaaatgatcaaaata 2675202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 5602941 - 5603019
Alignment:
Q  113 gttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactc 191  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| | |||| ||||||||||||    
T  5602941 gttgaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccctgtgtgagttaactc 5603019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 3792296 - 3792376
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||| ||||||||||| || | |||||| ||||| |||||| ||||||||| | | ||||||||||||||||||    
T  3792296 gaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaatacccttacgtgagttaactcacgct 3792376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 35392184 - 35392124
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatact 174  Q
    ||||| |||||||||||||||||| ||||||||||||  |||||||||||  |||||||||    
T  35392184 ttgaactctgctctttacccaaattgttttgctcattcccaaagtaaatgttcaaaatact 35392124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 37260991 - 37260936
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||| ||||||||||||||| |||||||| |||| |||||||||||| |||||||    
T  37260991 gaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaat 37260936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 2094442 - 2094384
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||||||||||| | ||||||    
T  2094442 ttgaattctgctcattacccaaattgttctgctcatttccaaagtaaatgtctaaaata 2094384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 5603221 - 5603159
Alignment:
Q  134 aaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    |||||| |||||||||||||||||||||||| |||| |   ||||| ||||||||||||||||    
T  5603221 aaatggatttgctcattttcaaagtaaatgatcaaagtgtccctgcatgagttaactcacgct 5603159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 27039260 - 27039302
Alignment:
Q  113 gttgaattctgctctttacccaaatggttttgctcattttcaa 155  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  27039260 gttgaattctgctctttacccaaatcgtttcgctcattttcaa 27039302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 3792558 - 3792615
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||| |||||||||| |||| |||||||| ||||||||| | |||||||    
T  3792558 ttgaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaat 3792615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 20447024 - 20447080
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    |||| |||| ||||||||||  |||||||||||| |||||||||||| |||||||||    
T  20447024 aattatgctttttacccaaactgttttgctcattctcaaagtaaatgtccaaaatac 20447080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 20532787 - 20532843
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    |||| |||| ||||||||||  |||||||||||| |||||||||||| |||||||||    
T  20532787 aattatgctttttacccaaactgttttgctcattctcaaagtaaatgtccaaaatac 20532843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 28476060 - 28476012
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatga 164  Q
    ||||||||||| ||||||||||||||  ||||||| |||||||||||||    
T  28476060 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatga 28476012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 33617644 - 33617699
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||| ||||| |||||||||||| || ||||||| ||||||||||||||| ||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaat 33617699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 5119109 - 5119051
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatact 174  Q
    ||||||||||||||| ||||| |||||||||||||   |||||||||| | ||||||||    
T  5119109 gaattctgctctttatccaaacggttttgctcattcctaaagtaaatgtctaaaatact 5119051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 39650194 - 39650251
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||| ||||| ||||||||| |||||||   |||||||||| |||||||    
T  39650194 ttgaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaat 39650251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 37259311 - 37259391
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||| ||||||||| | ||| |||||||||||||| ||||||||||| |  |||| ||||| |||  ||||| |||||||    
T  37259311 gaattatgctctttatctaaacggttttgctcatttccaaagtaaatgtctgaaatgctcctacgtatgttaattcacgct 37259391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 40266668 - 40266586
Alignment:
Q  115 tgaattctgctcttt-acccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||||| | | ||||||||||||||||||||    
T  40266668 tgaattctgctcttttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcacgct 40266586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 25787921 - 25787840
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgc 195  Q
    ||||||||||||||||| ||||| |||| ||||||||| |||| |||||||||||||| | ||||| |||||||||||||||    
T  25787921 ttgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcacgc 25787840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 25760591 - 25760512
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgc 195  Q
    ||||||||||||||||||||| |||| ||||| ||   ||||||||||| |||||||  |||| ||||||||||||||||    
T  25760591 gaattctgctctttacccaaacggttatgctcgttccaaaagtaaatgatcaaaatatccctgtgtgagttaactcacgc 25760512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 34017699 - 34017640
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||||||||||| ||||||    
T  34017699 ttgaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaatac 34017640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 25759838 - 25759920
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||||||||| ||||| || | ||||||||   ||||||||||||||||||    |||||||||||||||||||||    
T  25759838 ttgaattctgctctttatccaaacggatctgctcattcctaaagtaaatgaccaaaatgtctctgcgtgagttaactcacgct 25759920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 11135741 - 11135798
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||| ||||||||||||||||| ||| |||||||| |||| ||||||||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatac 11135798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 7336162 - 7336106
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    ||||| ||||||||||| |||| |||||||||||||  |||||||||||||||||||    
T  7336162 gaattatgctctttacctaaatagttttgctcatttctaaagtaaatgaccaaaata 7336106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 40266370 - 40266446
Alignment:
Q  116 gaattctgctcttta-cccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactc 191  Q
    ||||||||| ||||| ||||||||| |||| |||||  ||||||||||||||||||| | | |||||||||||||||    
T  40266370 gaattctgccctttaacccaaatggatttgttcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactc 40266446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 3458011 - 3458071
Alignment:
Q  113 gttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    |||||||||||||| ||||| |||  || |||||||||| ||||||||||| |||||||||    
T  3458011 gttgaattctgctcattaccgaaaccgtattgctcatttccaaagtaaatgtccaaaatac 3458071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 3758920 - 3758995
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaac 189  Q
    ||||||||||||||||||| ||| |||||| ||||||  |||||||||||  || | ||  |||||||||||||||    
T  3758920 ttgaattctgctctttaccaaaacggttttactcattcccaaagtaaatgttcatattatccctgcgtgagttaac 3758995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 22252331 - 22252276
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||| |||||||| ||||||||| ||||||| ||  |||||||||||||||||||    
T  22252331 gaattatgctctttgcccaaatggatttgctcgttcccaaagtaaatgaccaaaat 22252276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 38739387 - 38739434
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatg 163  Q
    ||||| |||||||||||||||| |||| ||||||| ||||||||||||    
T  38739387 gaattatgctctttacccaaatcgtttcgctcattgtcaaagtaaatg 38739434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 7164177 - 7164255
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacg 194  Q
    ||||||||||||||||| ||| | || ||||||||   |||||||||||||||||| |  || | ||||||||||||||    
T  7164177 gaattctgctctttacctaaacgtttctgctcattcctaaagtaaatgaccaaaatgcctctacatgagttaactcacg 7164255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 18673675 - 18673609
Alignment:
Q  127 tttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcac 193  Q
    |||||||||| | |||||||||||  ||||  ||| ||| ||||||| |||||||||||||||||||    
T  18673675 tttacccaaaagtttttgctcattcccaaataaaaagacaaaaatacccctgcgtgagttaactcac 18673609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 3759662 - 3759606
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    ||||||||||||||  || || ||||| |||||||| |||| |||||||||||||||    
T  3759662 gaattctgctcttttacccaacggtttcgctcatttccaaaataaatgaccaaaata 3759606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 6636980 - 6636908
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaa 188  Q
    ||||||||||| ||| |||||||  | || |||||  |||| |||||||||||||||  ||||||||||||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccctgcgtgagttaa 6636908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 7335534 - 7335590
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||| |||| ||||| |||||||||||||   ||| ||||||||||||||||    
T  7335534 aattctgctttttatccaaacggttttgctcattcctaaaataaatgaccaaaatac 7335590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 34708824 - 34708748
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcac 193  Q
    |||| |||||||||| |||| |||||| ||||||| |||| |||||| ||| | ||  ||||| |||||||||||||    
T  34708824 aattatgctctttactcaaacggttttactcatttccaaaataaatgtccatattatccctgcatgagttaactcac 34708748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 3588623 - 3588543
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||| |||||||||||||||  ||||||||||  |||| |||||||||||||| | ||||||||||||||||||||||    
T  3588623 gaattctactctttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccctgcgtgagttaactcacgct 3588543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 37687391 - 37687311
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgc 195  Q
    |||||||||||  ||||||||||||||  |||||||| ||||||||||| ||||||||  | | |||||||||||||||||    
T  37687391 tgaattctgcttattacccaaatggttccgctcatttccaaagtaaatgtccaaaatatccttacgtgagttaactcacgc 37687311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 9448343 - 9448425
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||| ||||||||||||||| ||||||| |||||  |||  ||||||||||||||||  || |||||||||| |||||||    
T  9448343 ttgaattttgctctttacccaaaaggttttgatcattcccaagataaatgaccaaaataccgctacgtgagttaagtcacgct 9448425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 43641052 - 43640998
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaa 169  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||    
T  43641052 tgaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaa 43640998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 3588340 - 3588396
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    ||||||||||||||| |||| ||| |||| ||||| |||||||||||||||||||||    
T  3588340 gaattctgctctttatccaattggatttgatcattctcaaagtaaatgaccaaaata 3588396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 1349045 - 1349127
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    |||||||||  |||||||||||| | |||||||||||  |||   |||||||||||||   ||||||||||||||||||||||    
T  1349045 ttgaattctattctttacccaaaagtttttgctcattcccaagtgaaatgaccaaaatgtccctgcgtgagttaactcacgct 1349127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 25497425 - 25497372
Alignment:
Q  120 tctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||||||| | | ||||||||||||||||||||||| || |||||||    
T  25497425 tctgctctttacccatacgtttttgctcattttcaaagtaaattacaaaaatac 25497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 9418586 - 9418638
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgacca 167  Q
    |||||||||||| ||||||||||||||| |||||||  ||||||||| |||||    
T  9418586 tgaattctgctcattacccaaatggtttcgctcattcccaaagtaaaagacca 9418638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 24899144 - 24899064
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||| |||||||||||||   ||||| |||||  || |||||||||||||||||||||| ||   |||||||||||||    
T  24899144 gaattctactctttacccaaacacttttgttcattcccagagtaaatgaccaaaatactcctacgcatgttaactcacgct 24899064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 33228960 - 33228912
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaatgac 165  Q
    |||| |||||||||| ||||||| ||||||||||| |||||||||||||    
T  33228960 aattatgctctttactcaaatggatttgctcatttccaaagtaaatgac 33228912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 35841397 - 35841453
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    ||||||||||||||||| |||  ||| |||||||||| |||||||||| ||||||||    
T  35841397 gaattctgctctttaccaaaacagttgtgctcatttttaaagtaaatgtccaaaata 35841453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 1349297 - 1349240
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||||||||||||| | |||||||||||  | ||  |||||||||||||||    
T  1349297 gaattctgctctttacccaaaagtttttgctcattcccgaatgaaatgaccaaaatac 1349240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 14087924 - 14087875
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatg 163  Q
    |||||||||||||||||| |||| |||||| |||||| ||||| ||||||    
T  14087924 ttgaattctgctctttactcaaacggttttactcattctcaaaataaatg 14087875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 25401245 - 25401192
Alignment:
Q  120 tctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||||||| | | |||||||||||| |||||||||| || |||||||    
T  25401245 tctgctctttacccatacgtttttgctcatttacaaagtaaataacaaaaatac 25401192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 33581841 - 33581870
Alignment:
Q  167 aaaatactcctgcgtgagttaactcacgct 196  Q
    ||||||||||||||||||||||||||||||    
T  33581841 aaaatactcctgcgtgagttaactcacgct 33581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 5967315 - 5967267
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatga 164  Q
    ||||||||||| |||||||||||| || |||||||  ||||||||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatga 5967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 25220766 - 25220738
Alignment:
Q  167 aaaatactcctgcgtgagttaactcacgc 195  Q
    |||||||||||||||||||||||||||||    
T  25220766 aaaatactcctgcgtgagttaactcacgc 25220738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 30533958 - 30533899
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    |||||||||||||||||| | || |||||||||||||||||||||||||  |||||||||    
T  30533958 ttgaattctgctctttactcgaacggttttgctcattttcaaagtaaatatccaaaatac 30533899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 3539667 - 3539724
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    |||||| ||||||||| |||||||||||||||||||| |||| ||||||| |||||||    
T  3539667 tgaattatgctctttatccaaatggttttgctcatttccaaaataaatgatcaaaata 3539724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 54529034 - 54528977
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||||||||| ||||| ||||||||||| |||| ||||||| |||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatac 54528977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 30533218 - 30533294
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaact 190  Q
    ||||||| | ||||| ||||||||||||| |||||||  ||||||||||| |  |||||| ||||||||||||||||    
T  30533218 ttgaattttactcttcacccaaatggtttcgctcattcccaaagtaaatgtcacaaatacccctgcgtgagttaact 30533294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 39685212 - 39685263
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgacca 167  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||| |||||    
T  39685212 gaattttgctcattacccaaatggtttcgctcattttcaaagtaaaagacca 39685263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 4969875 - 4969949
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaact 190  Q
    ||||||||||| ||||||||||||||  |||||||  ||||||||| | | ||||||| ||| ||||||||||||    
T  4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacgtgagttaact 4969949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 8150379 - 8150305
Alignment:
Q  122 tgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgct 196  Q
    |||||| |||||||||| |||||||||||| |||   ||| | ||||||| | ||||||||||||||||||||||    
T  8150379 tgctctctacccaaatgtttttgctcatttccaagtgaaaaggccaaaatgcccctgcgtgagttaactcacgct 8150305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 40517602 - 40517544
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    |||||||||||||||||||||| ||||| |||||||   ||||||||||||||| ||||    
T  40517602 tgaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgaccaagatac 40517544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 50663875 - 50663930
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||| ||||||||| ||| |||||||  |||||||||| ||||||||    
T  50663875 gaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaat 50663930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 53814639 - 53814584
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||| |||||||||||| || |||||||  |||||||||||| ||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaat 53814584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 33450112 - 33450034
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacg 194  Q
    ||||||||||| |||||||||  |||||||||||| ||||| |||||| ||| | |   |||||||||||||| |||||    
T  33450112 gaattctgctcattacccaaactgttttgctcattctcaaaataaatgtccatattgtccctgcgtgagttaagtcacg 33450034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 15040681 - 15040730
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgac 165  Q
    ||||||||||| |||||||||||| || |||||||  |||||||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgac 15040730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 44430418 - 44430463
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaa 161  Q
    ||||||||||| ||| |||||||||||||||||||  |||||||||    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaa 44430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 53101235 - 53101186
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgac 165  Q
    ||||||| |||||||||||||   |||||||||||| |||||||||||||    
T  53101235 gaattctactctttacccaaacatttttgctcatttccaaagtaaatgac 53101186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 6162761 - 6162705
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    |||||||||||| ||||||||||||||  |||||||  ||||||||| | |||||||    
T  6162761 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaat 6162705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 8150169 - 8150245
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactca 192  Q
    ||||| || |||||||||||| | |||||||||||  ||||| || |||||||||||| ||| |||  |||||||||    
T  8150169 gaattatgatctttacccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactca 8150245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaa 161  Q
    |||||||||| ||||||||||||||| |||||||  |||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 26998365 - 26998309
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaata 172  Q
    ||||||||||||| | ||||||||||| ||||||||  ||| ||||||| |||||||    
T  26998365 gaattctgctcttcatccaaatggtttcgctcatttctaaaataaatgatcaaaata 26998309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 46599 - 46657
Alignment:
Q  132 ccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaact 190  Q
    ||||| ||||||||||||| | ||||||||| |||||||||| ||||||||||||||||    
T  46599 ccaaacggttttgctcattattaaagtaaataaccaaaatacccctgcgtgagttaact 46657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 269110 - 269188
Alignment:
Q  117 aattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgc 195  Q
    |||||||||||||||||||| | |||||||||||  |||   ||||||||||||| | ||||||||| |||||||||||    
T  269110 aattctgctctttacccaaaagtttttgctcattcccaagtgaaatgaccaaaatgcccctgcgtgacttaactcacgc 269188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 37576543 - 37576617
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaact 190  Q
    ||||||||||| ||||||||| |||||||||| ||| ||||||||||| ||| | ||| ||| ||||||||||||    
T  37576543 gaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtccatattacccctacgtgagttaact 37576617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 33164585 - 33164528
Alignment:
Q  114 ttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||| ||||||||||||||  ||||||| |||||||||||| |||||||    
T  33164585 ttgaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaat 33164528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 54208180 - 54208237
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||| ||||||||| |||||||||||||||||||  |||||||||||| ||||||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatac 54208237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 36217870 - 36217925
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    |||||||||||||||| ||||||||||| ||||||  ||||||||| | |||||||    
T  36217870 gaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaat 36217925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 40312266 - 40312336
Alignment:
Q  125 tctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgc 195  Q
    ||||||||||||  |||||| |||||  |||||||||| ||||||| | | |||||| |||||||||||||    
T  40312266 tctttacccaaacagttttgatcattcccaaagtaaatcaccaaaaaattgctgcgtaagttaactcacgc 40312336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 40322342 - 40322412
Alignment:
Q  125 tctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaactcacgc 195  Q
    ||||||||||||  |||||| |||||  |||||||||| ||||||| | | |||||| |||||||||||||    
T  40322342 tctttacccaaacagttttgatcattcccaaagtaaatcaccaaaaaattgctgcgtaagttaactcacgc 40322412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 373524 - 373495
Alignment:
Q  159 aaatgaccaaaatactcctgcgtgagttaa 188  Q
    ||||||||||||||||||||||||||||||    
T  373524 aaatgaccaaaatactcctgcgtgagttaa 373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 38676939 - 38676996
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||| ||||||| ||||| |||||||||||||  |||| |||||| |||||||||    
T  38676939 gaattctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaatac 38676996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 47177912 - 47177969
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatac 173  Q
    ||||||||||||| ||||||| ||||| |||| ||  |||||||||| ||||||||||    
T  47177912 gaattctgctcttgacccaaacggtttcgctcgttcccaaagtaaattaccaaaatac 47177969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 51719852 - 51719779
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcgtgagttaac 189  Q
    ||||||||||  |||||||||||| || ||| |||| |||||||||| ||| |||||| ||| ||| |||||||    
T  51719852 gaattctgcttattacccaaatggattcgcttatttccaaagtaaataaccgaaatacccctacgtaagttaac 51719779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 24974221 - 24974169
Alignment:
Q  119 ttctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    |||||||| ||| |||||||| ||||||||||  |||||||||||||| ||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaat 24974169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 31323569 - 31323597
Alignment:
Q  167 aaaatactcctgcgtgagttaactcacgc 195  Q
    |||||||||||||||||||||||||||||    
T  31323569 aaaatactcctgcgtgagttaactcacgc 31323597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 40312869 - 40312813
Alignment:
Q  119 ttctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactc 175  Q
    |||||||| ||||||||||| ||| |||||||| ||||||||| | | |||||||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactc 40312813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 40322945 - 40322889
Alignment:
Q  119 ttctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactc 175  Q
    |||||||| ||||||||||| ||| |||||||| ||||||||| | | |||||||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactc 40322889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 1472 - 1539
Alignment:
Q  113 gttgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaatactcctgcg 180  Q
    |||||||||||||| ||||||||||||||  ||||||||| |||||||| | ||||||| | ||||||    
T  1472 gttgaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcg 1539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 35776 - 35831
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgaccaaaat 171  Q
    ||||||||||||||| |||||   ||||||||||| |||||||||||| |||||||    
T  35776 gaattctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaat 35831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 23486 - 23537
Alignment:
Q  115 tgaattctgctctttacccaaatggttttgctcattttcaaagtaaatgacc 166  Q
    |||||||||||| |||  |||||||||||||||||| |||||||||| ||||    
T  23486 tgaattctgctcattattcaaatggttttgctcattctcaaagtaaaagacc 23537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Complemental strand, 14733 - 14703
Alignment:
Q  166 caaaatactcctgcgtgagttaactcacgct 196  Q
    |||||||||||||||||||||||||||||||    
T  14733 caaaatactcctgcgtgagttaactcacgct 14703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 2931 - 2881
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaatgacc 166  Q
    ||||||||||| ||||||||||||||| ||||||| ||||| |||| ||||    
T  2931 gaattctgctcattacccaaatggtttcgctcattctcaaaataaaagacc 2881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 442 - 397
Alignment:
Q  116 gaattctgctctttacccaaatggttttgctcattttcaaagtaaa 161  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaa 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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