View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_high_24 (Length: 237)
Name: NF3707_high_24
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36669498 - 36669719
Alignment:
| Q |
1 |
caatgttgttttgaggaattgtcaatttctattatgacaatttggcttatggttgtgaagaagacaattcatacctagtaccaatttccaaccaaggtag |
100 |
Q |
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| T |
36669498 |
caatgttcttttgaggaattgtcaatttctattatgacaatttggcttatggttgtgaagaagacaattcataccaagtaccaatttccaaccaaggtag |
36669597 |
T |
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| Q |
101 |
gtagaactgaccaagaactattagtttgtctcaagctgcacaatacagcataactttctccacatcaaccccaagcaaaagagagatagagatcaaaagg |
200 |
Q |
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| T |
36669598 |
gtagaactgaccaagaactattagtttgtctcaagctgcacaatacagcataactttctccacatcaaccccaagcaaaagagagatagagatcaaaagg |
36669697 |
T |
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| Q |
201 |
atctagttataagaacataaat |
222 |
Q |
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| T |
36669698 |
atctagttataagaacgtaaat |
36669719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36675174 - 36675387
Alignment:
| Q |
1 |
caatgttgttttgaggaattgtcaatttctattatgacaatttggcttatggttgtgaagaagacaattcatacctagtaccaatttccaaccaaggtag |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
36675174 |
caatgttgttttgagaaattgtcaatttctattatgacaatttggcttatggttgtgaagaagacaa---agtccta---ccaatttccaaccaaggtag |
36675267 |
T |
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| Q |
101 |
gtagaactgaccaagaactat--tag-tttgtctcaagctgcacaatacagcataactttctccacatcaaccccaagcaaaagagagatagagatcaaa |
197 |
Q |
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| T |
36675268 |
gtagaattgactaagaactatattaggtttgtctcaagc---acaatatagcataactttctccacatcaaccccaaacaaaagagagatagagatcaat |
36675364 |
T |
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| Q |
198 |
aggatctagttataagaacataa |
220 |
Q |
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| T |
36675365 |
aggatctagttataagaacataa |
36675387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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