View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_high_6 (Length: 402)
Name: NF3707_high_6
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 29485305 - 29485460
Alignment:
| Q |
18 |
agatacttcatgtcaatatcattattataaaaaagagtcatactttagcttgattacatggtaaagaactaaaatatcaatctttcacttcaaatttgta |
117 |
Q |
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| T |
29485305 |
agatacttcatatcaatatcattattataaaaaagagtcatactttagcttgattacatggtaaagaactaaaatatcaatctttcacttcaaatttcta |
29485404 |
T |
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| Q |
118 |
ctcttaattaaatgaccactttataactgtgtttcaattgttcgtctattcaacat |
173 |
Q |
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| T |
29485405 |
ctcttaattaaatgagcactttataactgtgtttcaattgttcgtctattcaacat |
29485460 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 392
Target Start/End: Original strand, 29485464 - 29485526
Alignment:
| Q |
333 |
gtttatataggagttgggttaaaaaacaacc---taaaaatttagggttggaccgtccctttg |
392 |
Q |
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| T |
29485464 |
gtttatataggagttgggttaaaaaacaacctaataaaattttagggttggaccgtccctttg |
29485526 |
T |
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