View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3707_high_9 (Length: 349)

Name: NF3707_high_9
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3707_high_9
NF3707_high_9
[»] chr3 (1 HSPs)
chr3 (5-335)||(7147456-7147786)
[»] chr8 (2 HSPs)
chr8 (8-85)||(19786477-19786554)
chr8 (67-97)||(14628034-14628064)
[»] chr4 (2 HSPs)
chr4 (6-105)||(13129198-13129297)
chr4 (67-105)||(12318126-12318164)
[»] chr5 (2 HSPs)
chr5 (172-281)||(23264828-23264936)
chr5 (11-53)||(8366372-8366414)
[»] chr6 (1 HSPs)
chr6 (39-119)||(28586349-28586429)
[»] chr1 (2 HSPs)
chr1 (30-94)||(18328767-18328831)
chr1 (8-86)||(18830189-18830267)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 7147786 - 7147456
Alignment:
Q  5 ttgcttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147786 ttgcttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagag 7147687  T
Q  105 tttcatgaatctgatacatcacaatttgatatggcacaagctacgtaaaatgtgatagctgaaacatctagatacatggatgagtaatacgaactcgtta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147686 tttcatgaatctgatacatcacaatttgatatggcacaagctacacaaaatgtgatagctgaaacatctagatacatggatgagtaatacgaactcgtta 7147587  T
Q  205 ggagaggaagggaagaacaatgcactatctaacatcaaataatagagatcgtggttgaagcccaaaaccacttcaaaggaaccaagatgcagtaagacat 304  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147586 ggagagcaagggaagaacaatgcactatctagcatcaaataatagagatcgtggttgaagcccaaaaccacttcaaaggaaccaagatgcagtaagacat 7147487  T
Q  305 gacagcaggggcggatctattgttaaacatg 335  Q
    ||||||| ||||||||||| |||||||||||    
T  7147486 gacagcatgggcggatctactgttaaacatg 7147456  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 19786554 - 19786477
Alignment:
Q  8 cttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaa 85  Q
    ||||||||| ||||||||||||| ||||||| ||| |||||||||| ||||| |||||||| ||||||||||||||||    
T  19786554 cttgggtatttttgtttatggttgtttcagggaacgaatcatggatgattttgcaacagactagttcaatcattacaa 19786477  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 14628064 - 14628034
Alignment:
Q  67 accagttcaatcattacaacaatacataccc 97  Q
    |||||||||||||||||||||||||||||||    
T  14628064 accagttcaatcattacaacaatacataccc 14628034  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 13129198 - 13129297
Alignment:
Q  6 tgcttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagagt 105  Q
    |||||| |||| |||||||||| || ||| ||||||||| |||||||  ||||| ||| |  | ||||||||||||||||||||||||||||||| ||||    
T  13129198 tgcttgagtatttttgtttatgattgtttgaggaaacaattcatggagaattttgcaataaccaagttcaatcattacaacaatacataccctatggagt 13129297  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 12318164 - 12318126
Alignment:
Q  67 accagttcaatcattacaacaatacataccctatagagt 105  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  12318164 accaattcaatcattacaacaatacataccctatggagt 12318126  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 23264936 - 23264828
Alignment:
Q  172 ctagatacatggatgagtaatacgaactcgttaggagaggaagggaagaacaatgcactatctaacatcaaataatagagatcgtggttgaagcccaaaa 271  Q
    ||||||||||||||||||| || ||||||||| |||||| | | | | ||||||| ||||||   ||||||||||  ||||||||||||||| ||||| |    
T  23264936 ctagatacatggatgagtactatgaactcgtt-ggagagcaggtggaaaacaatggactatcatccatcaaataactgagatcgtggttgaatcccaaga 23264838  T
Q  272 ccacttcaaa 281  Q
    ||||||||||    
T  23264837 ccacttcaaa 23264828  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 8366372 - 8366414
Alignment:
Q  11 gggtatatttgtttatggttatttcaggaaacaaatcatggat 53  Q
    |||||| |||||||||||| |||||||||||||| ||||||||    
T  8366372 gggtatttttgtttatggtcatttcaggaaacaattcatggat 8366414  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 28586349 - 28586429
Alignment:
Q  39 aaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagagtttcatgaatctgat 119  Q
    |||| |||||||||||||||| ||| | ||||||||||||||| ||||||||  || | ||| |||| |||||||||||||    
T  28586349 aaacgaatcatggattattttgcaaaaaaccagttcaatcattgcaacaatatctagcatatggagtgtcatgaatctgat 28586429  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 18328767 - 18328831
Alignment:
Q  30 tatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacata 94  Q
    |||||||||||| || |||||||||||||||| ||| |||| ||  |||||||||||||||||||    
T  18328767 tatttcaggaaataattcatggattattttactacaaaccaatttgatcattacaacaatacata 18328831  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 18830267 - 18830189
Alignment:
Q  8 cttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaac 86  Q
    ||||||||| ||||||| || || ||||||| ||| ||| |||||| ||| | ||||  ||||||||||||||||||||    
T  18830267 cttgggtatttttgtttgtgattgtttcagggaacgaataatggataattcttcaacgaaccagttcaatcattacaac 18830189  T

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