View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_low_13 (Length: 347)
Name: NF3707_low_13
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 40849650 - 40849319
Alignment:
| Q |
1 |
atctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattctttagtgtattagacgattgatctatatagcactgacacttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40849650 |
atctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattctttagtgtattagacgattgatctatatagcactgacacttca |
40849551 |
T |
|
| Q |
101 |
aactaaatgtgtgtttggttttcaatgcatgattcgacatcgagacaagcatttgcattcgaccatttttattttctcaaattgttactgatgtttacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40849550 |
aactaaatgtgtgtttggttttcaatgcatgattcgacatcgagacaagcatttgcattcgatcatttttattttctcaaattgttactgatgtttacat |
40849451 |
T |
|
| Q |
201 |
gtctcactattgatgttgtatcggtgctctgtagttattgattcgcctgtgtctaacttccttannnnnnnaacaataggtgaaagaggctggtcacatg |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40849450 |
gtctcactattgatattgtatcggtgctctgtagttattgattcgcctgtgtttaacttccttatttttttaacaataggtgaaagaggctggtcacatg |
40849351 |
T |
|
| Q |
301 |
gttcctatggatcaaccaaaagctgcacttca |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
40849350 |
gttcctatggatcaaccaaaagctgcacttca |
40849319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 40843522 - 40843462
Alignment:
| Q |
272 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttca |
332 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40843522 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttca |
40843462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 40838808 - 40838748
Alignment:
| Q |
272 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttca |
332 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40838808 |
aacaatagttgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttca |
40838748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 40843709 - 40843592
Alignment:
| Q |
2 |
tctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattctttagtgtattagacgattgatctatatagcactgacacttcaa |
101 |
Q |
| |
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|||||||||||| |||||| | |||||||| |||||||||||| |||||||||||| | || || || | ||||||||| |||| || |||||||||| |
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| T |
40843709 |
tctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatagtacagacacttcaa |
40843610 |
T |
|
| Q |
102 |
actaaatgtgtgtttggt |
119 |
Q |
| |
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| |||| |||||| |||| |
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| T |
40843609 |
attaaaagtgtgtctggt |
40843592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 21151475 - 21151528
Alignment:
| Q |
274 |
caataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgca |
327 |
Q |
| |
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||||||||||| || ||||| || ||||| |||||||||||||||||||||||| |
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| T |
21151475 |
caataggtgaatgatgctggacatatggtccctatggatcaaccaaaagctgca |
21151528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 21146898 - 21146932
Alignment:
| Q |
298 |
atggttcctatggatcaaccaaaagctgcacttca |
332 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
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| T |
21146898 |
atggtccctatggatcaaccaaaagctgcacttca |
21146932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 21126805 - 21126838
Alignment:
| Q |
299 |
tggttcctatggatcaaccaaaagctgcacttca |
332 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
21126805 |
tggtccctatggatcaaccaaaagctgcacttca |
21126838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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