View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_low_19 (Length: 279)
Name: NF3707_low_19
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 41931877 - 41931619
Alignment:
| Q |
1 |
tcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagtttcattgattttctccattaattcctttcctaaaatgaaagaagcaacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931877 |
tcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagtttcattgattttctccattaattcctttcctaaaatgaaagaagcaacta |
41931778 |
T |
|
| Q |
101 |
cctttatttgtttaattatttatctattttgtgtagcaattgtgagctttggaaaagtttctgaagaacaaaagcaagaagttgagaagttgggggtgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931777 |
tctttatttgtttaattatttatctattttgtgtagcaattgtgagctttggaaaagtttctgaagaacaaaagcaagaagttgagaagttgggggtgaa |
41931678 |
T |
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| Q |
201 |
aatatattcgtgggatgaatttttagaagtggtgggttattattactatttttcctcct |
259 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931677 |
aatatattcatgggatgaatttttagaagtggtgggttattattactatttttcctcct |
41931619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2202117 - 2202166
Alignment:
| Q |
1 |
tcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagt |
50 |
Q |
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|||||||||||||||||||||||| ||| || | |||||||||||||||| |
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| T |
2202117 |
tcagctattgaagacatttccaaatgcaacaaaatatctcaagagtaagt |
2202166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 2202241 - 2202347
Alignment:
| Q |
135 |
agcaattgtgagctttggaaaagtttctgaagaacaaaagcaagaagttgagaagttgggggtgaaaatatattcgtgggatgaatttttagaagtggtg |
234 |
Q |
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| T |
2202241 |
agcaattgtgagcttcggaaaggttacccctgaacaaaagcaagaagttgaaaagtttggattggcaatatattcatggactgaatttttacaattggtg |
2202340 |
T |
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| Q |
235 |
ggttatt |
241 |
Q |
| |
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|||||| |
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| T |
2202341 |
agttatt |
2202347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2214712 - 2214761
Alignment:
| Q |
1 |
tcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagt |
50 |
Q |
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|||||||||||||||||||||||| ||| | | |||||||||||||||| |
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| T |
2214712 |
tcagctattgaagacatttccaaatgcaaccaaatatctcaagagtaagt |
2214761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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