View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_low_3 (Length: 585)
Name: NF3707_low_3
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 361 - 577
Target Start/End: Complemental strand, 23408093 - 23407877
Alignment:
| Q |
361 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctgtaagcacaaacacatctgatacaaaatatatacatgaaagttc |
460 |
Q |
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| T |
23408093 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctttaagcacaaacacatctgatacaaaatatatacatgaaagttc |
23407994 |
T |
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| Q |
461 |
agaggtgagcttagaaggaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
560 |
Q |
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| T |
23407993 |
agaggtgagcttagaaagaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
23407894 |
T |
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| Q |
561 |
tggaattggttcatctc |
577 |
Q |
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| T |
23407893 |
tggtattggttcttctc |
23407877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 23408494 - 23408328
Alignment:
| Q |
16 |
taatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgcttgtagaattgggtttctctctgtttt |
115 |
Q |
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| T |
23408494 |
taatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgcttgtagaattgggtttctctctgtttt |
23408395 |
T |
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| Q |
116 |
gaatgattgatctaggggtatcaaagactgaatacattttctcataaaatatagttggattcctcct |
182 |
Q |
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| T |
23408394 |
gaatgattgatctaggggtatcaaagacggaatacattttctcataaaatatagttggattcctcct |
23408328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 217 - 351
Target Start/End: Complemental strand, 23408326 - 23408192
Alignment:
| Q |
217 |
tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttgctgtaattctgca |
316 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
23408326 |
tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttgctgtaattgtgca |
23408227 |
T |
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| Q |
317 |
gaagatatctgctatatgtttaattataagtggac |
351 |
Q |
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| T |
23408226 |
gaagatatctgctatatgtttaattataagtggac |
23408192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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