View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_low_35 (Length: 213)
Name: NF3707_low_35
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 41707417 - 41707606
Alignment:
| Q |
18 |
ctacttgcaatcggatgtccatgtctagaatgggaatcaattgtagcttctctagtttgtgtcataactgataagaaactattaactataattatgat-a |
116 |
Q |
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| T |
41707417 |
ctacttgcaatcggatgtccatgtctagaatgggaatcaattgtagctcctctagtttgtgtcataactgataagaaactattaactataattatgataa |
41707516 |
T |
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| Q |
117 |
ataaaagtaaaattgcatagtgtattagaaaattacaccataaattaaaggaaggaataaagagacaaataaatgagagggatgatgatg |
206 |
Q |
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| T |
41707517 |
ataaaagtaaaattgcatagtgtattagaaaattacaccataaattaaaggaaggaataaaaagacaaataaatgagagggatgatgatg |
41707606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 41717310 - 41717422
Alignment:
| Q |
26 |
aatcggatgtccatgtctagaatgggaa---tcaattgtagcttctctagtttgtgtcataactgataagaaactattaactataattatgataataaaa |
122 |
Q |
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| T |
41717310 |
aatcggatgtctatgtctagaatgggaagcatcaattgtagctcctctagtttgtgtcataactgataagaaattattaactataattatgataataaat |
41717409 |
T |
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| Q |
123 |
gtaaaattgcata |
135 |
Q |
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| T |
41717410 |
gtaaaattgcata |
41717422 |
T |
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