View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_low_4 (Length: 540)
Name: NF3707_low_4
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 330 - 531
Target Start/End: Original strand, 46447977 - 46448178
Alignment:
| Q |
330 |
tactaaccgcaaatgcggatgggagcacgaagatcaagaagaataggttgagagaggaagatttgtcttgcattgatgcaaagttgacgaatctcagatt |
429 |
Q |
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| T |
46447977 |
tactaaccgcaaatgcggatgggagcacgaagatcaagaagaataggttgagagaggaagatttgtcttgcattgatgcaaagttgacgaatctcagatt |
46448076 |
T |
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| Q |
430 |
cagaaagttgtacttgttttcctccctttccttctaacaatcttcttatcacatcatctagcactgttttgtccatttctccttccattgttgttcctat |
529 |
Q |
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| T |
46448077 |
cagaaagttgtacttgttttcctccctttccttctaacaatcttcttatcacatcatctaccactgttttgtccatttctccttccattgttgttcctat |
46448176 |
T |
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| Q |
530 |
gc |
531 |
Q |
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|| |
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| T |
46448177 |
gc |
46448178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 46447662 - 46447916
Alignment:
| Q |
20 |
gttcgaatgagataaaacttggttttcatgatatattttaatatttcat-aaattaacaaaacatttatcaaagttgttattgtcttccttaaatggcca |
118 |
Q |
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| T |
46447662 |
gttcgaaagagataaaacttggttttcatgatatattttaatatttcattaaattaacaaaacatttatcaaagttgttattgtcttccttaaatggcca |
46447761 |
T |
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| Q |
119 |
gtattcttaattgtaaaaacattagttttcatttttaataacttccaattaatctttccacatcttatgaacgnnnnnnntatatatttttgaaaaatag |
218 |
Q |
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| T |
46447762 |
gtattcttaattgtaaaaacattagttttcatttttaataacttctaattaatctttccacatcttatgaacgaaaga---atatatttttgaaaaatag |
46447858 |
T |
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| Q |
219 |
-----tttgttaacaaaagaagcgatgatgaataatttatgagattcaatagattgat |
271 |
Q |
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| T |
46447859 |
tttgttttgttaacaaaagaagggatgatgaataatttatgagattcaatagattgat |
46447916 |
T |
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