View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_low_5 (Length: 471)
Name: NF3707_low_5
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Original strand, 6184566 - 6185009
Alignment:
| Q |
12 |
agatgaaagagaacatattggtgcatgcacaaaatctaaagtaaatagacaagaaaaacaccgagaaaaagataggactaagaacgtatatatcaaaatg |
111 |
Q |
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| T |
6184566 |
agatgaaagagaacatattggtgcatgcacaaaatctaaagtaaatagacaagaaaaacaccgagaaaaagataggactaagaacgtatatatcaaaatg |
6184665 |
T |
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| Q |
112 |
taacataattaaacaagtacatatgacatgacaccaaaatttttggaatatagtctttgattctaactctgaaaagaccgtctaaatttgatggacattg |
211 |
Q |
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| T |
6184666 |
taacataattaaacaagtacatatgacatgacaccaaaatttttggaatatagtctttgattctaactctgaaaagaccgtctaaatttgatggacattg |
6184765 |
T |
|
| Q |
212 |
attaatttatagttgatgcttgaagtctaatttgcttattgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaa |
311 |
Q |
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| T |
6184766 |
attaatttatagttgatgcttgaagtctaatttgcttattgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaa |
6184865 |
T |
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| Q |
312 |
ctcattttcttcttctatttttggttccatcttcatagactctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgtgt |
411 |
Q |
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| T |
6184866 |
ctcattttcttcttctatttttggttccatcttcatagactctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgtgt |
6184965 |
T |
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| Q |
412 |
ctataagatttacttcttcggtagattgatcttgtaggaaatgt |
455 |
Q |
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| T |
6184966 |
ctataagatttacttcttcggtagattgatcttgtaggaaatgt |
6185009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 151 - 409
Target Start/End: Original strand, 45336418 - 45336664
Alignment:
| Q |
151 |
tttttggaatatagtctttgattctaactctgaaaagaccgtctaaatttgatggacattgattaatttatagttgatgcttgaagtctaatttgcttat |
250 |
Q |
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|||||||||||||||||||||||||||| |||||| |||| |||||||||||| | |||| || |||||||||||| ||||| |||||||||| |
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| T |
45336418 |
tttttggaatatagtctttgattctaacactgaaa-gaccttctaaatttgatagtcattaat--------agttgatgcttggagtctgatttgcttat |
45336508 |
T |
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| Q |
251 |
tgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaactcattttcttcttctatttttggttccatcttcataga |
350 |
Q |
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|||||||||||||||| |||||||| ||||||||| |||| ||||| |||||||||||||||||||| |||||||| |||| |||| |||||||| | |
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| T |
45336509 |
tgaatttctgaataaactcttccacactcttattgcgatcctcattcgacatcttagaaaactcatt---ttcttctacttttagttctatcttcatgta |
45336605 |
T |
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| Q |
351 |
ctctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgt |
409 |
Q |
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||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| |
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| T |
45336606 |
atctaaccttctcactgaattcttcctttcatcaataacaacatacttggctctattgt |
45336664 |
T |
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