View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3707_low_6 (Length: 424)
Name: NF3707_low_6
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 983244 - 982839
Alignment:
| Q |
1 |
aatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacataaaatacctatata |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
983244 |
aatgcatgaccaagacacaagatactttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacataaaatacctatata |
983145 |
T |
|
| Q |
101 |
ctttattttgtagcaaatgtttaaattgtactatattttttcttgtacaaacttgtactatataattaatttaccatagcagttcagttcacgcacgcat |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
983144 |
ctttattttgtagcaaatgtttaaactgtactatattttttcttgtacaaacttgtactatattattaatttaccatagcagttcagttcatgcacgcat |
983045 |
T |
|
| Q |
201 |
aaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatcagtgaacacaacatacaacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
983044 |
aaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatcagtgaacacaacatacaacatt |
982945 |
T |
|
| Q |
301 |
ataacataatcacatggaggtcggttgagagacttgttgcatcgaacgatttttgaaagcttgactgagttaactctgggttgaagaattgtttgagagt |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
982944 |
ataacataatcacgtggaggtcggttgagagacttgttgcatcgaatgatttctgaaagcctgactgagttaactctgggttgaagaattgtttgagagt |
982845 |
T |
|
| Q |
401 |
tgaagg |
406 |
Q |
| |
|
|||||| |
|
|
| T |
982844 |
tgaagg |
982839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40413316 - 40413224
Alignment:
| Q |
1 |
aatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacataaaatac |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
40413316 |
aatgcatgaccaagacacaagatgctttaaaaagaaataccctcgaaatatcttctaccatttacatcatcaactgtttgacatatacaatac |
40413224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University