View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3707_low_7 (Length: 423)
Name: NF3707_low_7
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3707_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 35524269 - 35523877
Alignment:
| Q |
15 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagccaaaggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35524269 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagccaacggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
35524170 |
T |
|
| Q |
115 |
attcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcgggcgcccacatacgtgctcttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35524169 |
gttcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcgggcgcccacatatgtgctcttt |
35524070 |
T |
|
| Q |
215 |
ctttggatgctccttatatggtcctccacactcttcaacatcatcatcatcacctctgccaaatcaaccgtatcaacttttcataggataatgttttatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35524069 |
ctttggatgctccttatatggtcctccacactcttcaacatcatcatcatcacctctgccaaatcaaccgtatcaacttttcgtaggataatgttttatt |
35523970 |
T |
|
| Q |
315 |
gactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagacnnnnnnnnctaaatttcttttgtgtgtgaactctc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
35523969 |
gactaccttttctccatacacacaatgtaccatcctcatgggagagtatgtgagagacaaaaaaaattaaatttcttttgtgtgtgaactctc |
35523877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 35520680 - 35520416
Alignment:
| Q |
15 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagccaaaggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520680 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagctaaaggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
35520581 |
T |
|
| Q |
115 |
attcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcgggcgcccacatacgtgctcttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
35520580 |
attcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcggacgcccacatatgtgttcttt |
35520481 |
T |
|
| Q |
215 |
ctttggatgctccttatatggtcctccacactcttcaacatcatcatcatcacctctgccaaatcaac |
282 |
Q |
| |
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||| ||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
35520480 |
cttaggatgctccttgtatggtcctcgacactcatcaacatcatc---atcacctctgccaaatcaac |
35520416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 35527072 - 35527011
Alignment:
| Q |
64 |
gttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtggattcaataaca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
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|
| T |
35527072 |
gttgaccttctactgcatgtgatatgacttttctagcaatgctaccagtgggttcaataaca |
35527011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 43359155 - 43359083
Alignment:
| Q |
299 |
aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
371 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||||| || ||||||| |||||||||||||||| |
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| T |
43359155 |
aggataatgtttcattgacaccattttctccatacacacaatgtatcaccctcatgtgagagtgtgtgagaga |
43359083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 15066041 - 15066092
Alignment:
| Q |
321 |
cttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||| ||||||||||||||||| |
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|
| T |
15066041 |
cttttttccatacatacaatgtaccactctcatgtgagagtgtgtgagagac |
15066092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 34311235 - 34311285
Alignment:
| Q |
322 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | ||||||| ||||||||| |
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|
| T |
34311235 |
ttttctccatacacataatgtaccaccctcacgtgagagtgcgtgagagac |
34311285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 13276472 - 13276541
Alignment:
| Q |
298 |
taggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtga |
367 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||| |||||||| | |||| |||||||||||| |
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| T |
13276472 |
taggataatgtttcatgaacacccttttctccatacacactatgtaccactcccatgtgagagtgtgtga |
13276541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 19989419 - 19989347
Alignment:
| Q |
299 |
aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||||||||| ||||||| |||||| ||||||||||||||||| |
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| T |
19989419 |
aggataatgtttcatagacactcttttctc-atacacacattgtaccactctcatgtgagagtgtgtgagagac |
19989347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 46135685 - 46135636
Alignment:
| Q |
322 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
371 |
Q |
| |
|
||||||||||||||||| ||||||| || ||| |||||||||||||||| |
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|
| T |
46135685 |
ttttctccatacacacattgtaccacccctatgtgagagtgtgtgagaga |
46135636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 48034808 - 48034879
Alignment:
| Q |
300 |
ggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||| ||||||| | ||||| ||||||||||||||||| |
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|
| T |
48034808 |
ggataatgttttatgtacacacttttttccatacacacattgtacca-cttcatgtgagagtgtgtgagagac |
48034879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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