View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3707_low_8 (Length: 417)

Name: NF3707_low_8
Description: NF3707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3707_low_8
NF3707_low_8
[»] chr6 (6 HSPs)
chr6 (25-407)||(35220255-35220640)
chr6 (19-77)||(24177692-24177750)
chr6 (19-89)||(7072616-7072686)
chr6 (20-59)||(5827630-5827669)
chr6 (22-68)||(19110393-19110439)
chr6 (19-59)||(15610166-15610206)
[»] chr4 (9 HSPs)
chr4 (19-386)||(13501226-13501596)
chr4 (21-77)||(32663681-32663737)
chr4 (19-77)||(54781834-54781892)
chr4 (20-60)||(25587932-25587972)
chr4 (19-65)||(46387917-46387963)
chr4 (19-65)||(48213496-48213542)
chr4 (24-77)||(17777916-17777969)
chr4 (20-68)||(53708209-53708257)
chr4 (21-68)||(8943520-8943567)
[»] chr3 (12 HSPs)
chr3 (19-407)||(5561720-5562103)
chr3 (19-376)||(44328074-44328434)
chr3 (19-118)||(17058835-17058934)
chr3 (19-77)||(13503302-13503360)
chr3 (19-104)||(634845-634930)
chr3 (20-60)||(25537485-25537525)
chr3 (20-68)||(45779751-45779799)
chr3 (20-71)||(53581331-53581382)
chr3 (25-65)||(27024098-27024138)
chr3 (20-68)||(43640497-43640545)
chr3 (21-68)||(20685459-20685506)
chr3 (19-77)||(8088148-8088206)
[»] chr7 (11 HSPs)
chr7 (19-309)||(28543924-28544217)
chr7 (19-77)||(21504997-21505055)
chr7 (290-366)||(1362203-1362279)
chr7 (20-68)||(23834834-23834882)
chr7 (20-71)||(22911218-22911269)
chr7 (20-71)||(23040077-23040129)
chr7 (20-68)||(38047050-38047098)
chr7 (20-59)||(13596975-13597014)
chr7 (19-66)||(24062619-24062665)
chr7 (20-71)||(26754923-26754974)
chr7 (22-68)||(5635035-5635081)
[»] chr2 (12 HSPs)
chr2 (19-263)||(29991881-29992128)
chr2 (19-77)||(22849506-22849564)
chr2 (19-77)||(26370449-26370507)
chr2 (19-77)||(27635131-27635189)
chr2 (19-65)||(33845709-33845755)
chr2 (20-104)||(19933952-19934036)
chr2 (20-68)||(26510116-26510164)
chr2 (19-66)||(3981805-3981852)
chr2 (22-77)||(10944212-10944267)
chr2 (22-77)||(10950081-10950136)
chr2 (20-68)||(13911691-13911739)
chr2 (193-245)||(19934128-19934180)
[»] chr5 (6 HSPs)
chr5 (19-348)||(25585966-25586299)
chr5 (23-245)||(5583844-5584069)
chr5 (23-65)||(20351259-20351301)
chr5 (19-65)||(21708479-21708525)
chr5 (22-71)||(20174606-20174655)
chr5 (193-245)||(20351432-20351484)
[»] chr8 (6 HSPs)
chr8 (19-112)||(4424681-4424774)
chr8 (19-68)||(10543961-10544010)
chr8 (22-77)||(13523171-13523226)
chr8 (22-77)||(13612706-13612761)
chr8 (20-68)||(26381371-26381419)
chr8 (19-71)||(8871877-8871929)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-77)||(203203-203261)
[»] chr1 (7 HSPs)
chr1 (19-79)||(16906794-16906854)
chr1 (193-323)||(22069574-22069704)
chr1 (19-67)||(20491501-20491549)
chr1 (19-77)||(17092943-17093001)
chr1 (23-65)||(42311951-42311993)
chr1 (25-66)||(24449208-24449249)
chr1 (23-60)||(35537509-35537546)
[»] scaffold0044 (1 HSPs)
scaffold0044 (19-65)||(11026-11072)
[»] scaffold0068 (1 HSPs)
scaffold0068 (19-65)||(5385-5431)
[»] scaffold0913 (1 HSPs)
scaffold0913 (21-69)||(3590-3638)
[»] scaffold0898 (1 HSPs)
scaffold0898 (21-69)||(1963-2011)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 25 - 407
Target Start/End: Original strand, 35220255 - 35220640
Alignment:
Q  25 tttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtataatctt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  35220255 tttgcttgtctccgtacaaactcaacactagagttttcataatactgactaaatacggatttacattcattgataatagcaccatattccgtataatttt 35220354  T
Q  125 gcttgtt---ggcaaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagagctgataacaa 221  Q
    |||||||   ||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35220355 gcttgttagaggcaaagttgtcgacaaccgtctttgagtcaagttcaaagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaa 35220454  T
Q  222 acccaacgcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgccttcctcgtctctaatacatatgccaata 321  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35220455 acccaaagcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgccttcctcgtctctaatacatatgtcaata 35220554  T
Q  322 cccacttggttgtcgttgtttggaaaggaagcgtctatgttacatttgaatctacttgcgcttggtttctaccacttaaacctttg 407  Q
    |||||| |||||| |||| |||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  35220555 cccactcggttgttgttgattggaaaggaattgtctatgttacatttgaatctacctgcgcttggtttctgccacttaaacctttg 35220640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 24177750 - 24177692
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  24177750 acctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaa 24177692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 7072616 - 7072686
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttaca 89  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||||  |||| |||||||  ||||||||    
T  7072616 acctcatttgattgtctctgcacaaactcaacactagagttttcatataattgcctaaataaagatttaca 7072686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 5827669 - 5827630
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagtt 59  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5827669 cctcatttgcttgtctccttacaaactcaacactagagtt 5827630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 19110393 - 19110439
Alignment:
Q  22 tcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||    
T  19110393 tcatttgcttgtctccgtacaaactctaccttagagatttcataata 19110439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 15610206 - 15610166
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagtt 59  Q
    |||||||||| ||||||||  ||||||||||||||||||||    
T  15610206 acctcatttgtttgtctcctcacaaactcaacactagagtt 15610166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 13501596 - 13501226
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||| |||||    
T  13501596 acctcatttgcttgtctccgtacaaactcaacactagaattttcataatactgattaaatacagatttacattcattaataatagcaccatattacgtat 13501497  T
Q  119 aatcttgcttgtt---ggcaaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagagctga 215  Q
     ||||||||||||   ||||||||| ||||||||| ||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  13501496 gatcttgcttgttagaggcaaagctgtcgacaaccttctttaagtcaagttcaaagtctattggtcctaacctcaagtcatgaacccattgaaaagctga 13501397  T
Q  216 taacaaacccaacgcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgccttcctcgtctctaatacatatg 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  13501396 taacaaacccaacgcttctccaatattcacctcatgcttgtgctcaaaccattccatttttgcaagcacaaatacgccttcctcgtctctaatacatatg 13501297  T
Q  316 ccaatacccacttggttgtcgttgtttggaaaggaagcgtctatgttacatttgaatctacttgcgcttgg 386  Q
    |||||||||||| | ||||| || ||||||||||||| ||||||||||||||||||||||| || ||||||    
T  13501296 ccaatacccactcgattgtcattatttggaaaggaagtgtctatgttacatttgaatctacatgtgcttgg 13501226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 32663737 - 32663681
Alignment:
Q  21 ctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  32663737 ctcatttgcttgtctccgtacaaactcaacagtcgagttttcataataatgtctaaa 32663681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 54781892 - 54781834
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||| |||| |||||    
T  54781892 acctcatttgcttgcctccgtacaaactcaacacatgagttttcataaaattggctaaa 54781834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 25587972 - 25587932
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttt 60  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  25587972 cctcatttgcttgtctccgaacaaactcaacactagagttt 25587932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 46387917 - 46387963
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||| |||| |||||||||||||| ||||||||||||    
T  46387917 acctcatttgcttgcctccatacaaactcaacacgagagttttcata 46387963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 48213542 - 48213496
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||||    
T  48213542 acctcatttgcttgcctccgtacaaactcgacacgagagttttcata 48213496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 17777916 - 17777969
Alignment:
Q  24 atttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||||||||||||| ||| | |||||||||||||| || |||||    
T  17777916 atttgcttgtctccgtacaaactctacagtcgagttttcataataatgcctaaa 17777969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 53708209 - 53708257
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||||||||    
T  53708209 cctcatttgcttgtctccgcacaaactctaccttagagttttcataata 53708257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 8943520 - 8943567
Alignment:
Q  21 ctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||| |||||||| ||  ||||||||||||||||    
T  8943520 ctcatttgcttgtctccgcacaaactctaccttagagttttcataata 8943567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 5561720 - 5562103
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5561720 acctcatttgcttgtctccgtacaaactcaacactagaattttcataatactgactaaatacggatttacattcattgataatagcaccatattccatat 5561819  T
Q  119 aatcttgcttgtt---ggcaaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagagctga 215  Q
     ||||| ||||||   ||||||||| ||||||||| ||||||||||||  |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  5561820 gatctttcttgttagaggcaaagctgtcgacaaccttctttgagtcaagatcaaagtctattggtcctaacctcaagtcatgaacccattgaagagctga 5561919  T
Q  216 taacaaacccaacgcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgccttcctcgtctctaatacatatg 315  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||    
T  5561920 taacaaacccaacgcttctccaatatgcatctcgtgcttgtgctcaaaccattccgtttttgcaagcacaaacacgccttcctcgt--------catatg 5562011  T
Q  316 ccaatacccacttggttgtcgttgtttggaaaggaagcgtctatgttacatttgaatctacttgcgcttggtttctaccacttaaacctttg 407  Q
    |||||||||||| ||||||| || ||||||||| |||||| |||||||||||||||||||| || ||||||||||| |||||||| ||||||    
T  5562012 ccaatacccactcggttgtcattatttggaaagtaagcgtgtatgttacatttgaatctacctgtgcttggtttctgccacttaatcctttg 5562103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 44328434 - 44328074
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtat 118  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||    
T  44328434 acctcatttgcttgtcttcgtaaaaactcaacactagagttttcataatagtgactaaatacggatttacattcattgataatagcaccatattctgtat 44328335  T
Q  119 aatcttgcttgttgg---caaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagagctga 215  Q
    |||||||| |||  |   ||||| | ||||||||| ||| |||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  44328334 aatcttgcatgtcagacgcaaagttgtcgacaaccttctctgagtctaattcaaagtctgttggtcctaacctcgattcatgaacccattgaagagctga 44328235  T
Q  216 taacaaacccaacgcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgccttcctcgtctctaatacatatg 315  Q
    ||| |||||||||  ||||| ||||| ||| ||||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  44328234 taagaaacccaacatttctctaatatccacttcatgcttgtgctcaagacatttcgtttttgcaatcacaaacatgccttcctcgtctctaatacatatg 44328135  T
Q  316 ccaatacccacttggttgtcgttgtttggaaaggaagcgtctatgttacatttgaatctac 376  Q
     ||||||||||| | ||||| || |||||||||||||||||| ||||||||||||||||||    
T  44328134 tcaatacccactcgattgtcattttttggaaaggaagcgtctgtgttacatttgaatctac 44328074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 17058835 - 17058934
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtat 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  |||| |||||||  | |||||| ||||| |||||||| ||| ||| |||||    
T  17058835 acctcatttgcttgtctccgcacaaactcaacactagagttttcatataattgcctaaataaagttttacaatcattaataatagctccaaattccgtat 17058934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 13503360 - 13503302
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  13503360 acctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaa 13503302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 634930 - 634845
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagc 104  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||| ||||| |||| |  | |||||| ||||| ||||||||    
T  634930 acctcatttgcttgtctccgaacaaactctacactcgagttttcataaaattgattaaacaaagttttacagtcattaataatagc 634845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 25537485 - 25537525
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttt 60  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  25537485 cctcatttgcttgtctccgcacaaactcaacactagagttt 25537525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 45779799 - 45779751
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  45779799 cctcatttgcttgtctccgtacaaactctaccttagagttttcataata 45779751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 53581382 - 53581331
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataatattg 71  Q
    |||||||||||||||||| ||||||||||| |||||||||  ||||||||||    
T  53581382 cctcatttgcttgtctccttacaaactcaaaactagagttgacataatattg 53581331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 27024098 - 27024138
Alignment:
Q  25 tttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  27024098 tttgcttgtctccgcacaaactcaacacttgagttttcata 27024138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 43640545 - 43640497
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||||||||    
T  43640545 cctcatttgcttgtctccgcacaaactctaccttagagttttcataata 43640497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 20685506 - 20685459
Alignment:
Q  21 ctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||  ||||||||||||||||||||  |||||||    
T  20685506 ctcatttgcttgtctcctcacaaactcaacactagagttgacataata 20685459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 8088206 - 8088148
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||  ||||||||||||||||| |||| | |||||||||||||| || |||||    
T  8088206 acctcatttatttgtctccgtacaaacttaacagtcgagttttcataataatgcctaaa 8088148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 28544217 - 28543924
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtat 118  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  28544217 acctcatttgcttgtcttcgtacaaactcaacactagagtttacataatactgactaaatacggatttacattcatggataatagcaccatattccgtat 28544118  T
Q  119 aatcttgcttgtt---ggcaaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagagctga 215  Q
    |||||||||||||   ||||||||| | ||||||| |||||||||||| || ||||| || ||||| ||||||||||||||||| |||||||||||||||    
T  28544117 aatcttgcttgttagaggcaaagctgttgacaaccttctttgagtcaagttaaaagtatattggtcttaacctcaattcatgaatccattgaagagctga 28544018  T
Q  216 taacaaacccaacgcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgccttcctcgtctctaata 309  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |||||||  |||||||||||||||||||    
T  28544017 taacaaacccaacgcttctccaatatgcaccccatgcttgtgctaaaaacattccgtttttgcaagcacaaacgtgccttcctcgtctctaata 28543924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 21505055 - 21504997
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  21505055 acctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaa 21504997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 1362203 - 1362279
Alignment:
Q  290 cgccttcctcgtctctaatacatatgccaatacccacttggttgtcgttgtttggaaaggaagcgtctatgttacat 366  Q
    |||||||||||||||||||| ||||||||||||| ||| | ||||| || |||| ||| ||||||| ||||||||||    
T  1362203 cgccttcctcgtctctaatatatatgccaatacctactcgattgtcattatttgaaaaagaagcgtttatgttacat 1362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 23834882 - 23834834
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  23834882 cctcatttgcttgtctccgtacaaactctaccttagagttttcataata 23834834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 22911269 - 22911218
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataatattg 71  Q
    |||||||||||||||||| ||||||||||| |||||||||  ||||||||||    
T  22911269 cctcatttgcttgtctccttacaaactcaaaactagagttgacataatattg 22911218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 23040077 - 23040129
Alignment:
Q  20 cctcatttgcttg-tctccgtacaaactcaacactagagttttcataatattg 71  Q
    ||||||||||||| ||||| |||||||||||||||||||||  ||||||||||    
T  23040077 cctcatttgcttggtctccttacaaactcaacactagagttgacataatattg 23040129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 38047098 - 38047050
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||||||||||||| ||  || |||||||||||||    
T  38047098 cctcatttgcttgtctccgtacaaactctaccttaaagttttcataata 38047050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 13597014 - 13596975
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagtt 59  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  13597014 cctcatttgcttgtctcctcacaaactcaacactagagtt 13596975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 24062619 - 24062665
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataa 66  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||    
T  24062619 acctcatttgcttgtctccgcac-aactcaacactacagttttcataa 24062665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 26754974 - 26754923
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataatattg 71  Q
    ||||||||||||||||||  ||||||||||||||| ||||  ||||||||||    
T  26754974 cctcatttgcttgtctcctcacaaactcaacactatagttgacataatattg 26754923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 5635081 - 5635035
Alignment:
Q  22 tcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||| ||||||||||| ||  ||||||||||||||||    
T  5635081 tcatttgcttgtcttcgtacaaactctaccttagagttttcataata 5635035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 29992128 - 29991881
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtat 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29992128 acctcatttgcttgtctccgtacaaactcaacacaagagttttcataatactgactaaatacggatttacattcattgataatagcaccatattccgtat 29992029  T
Q  119 aatcttgcttgtt---ggcaaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagagctga 215  Q
     |||||||||| |   ||||||||| ||||||||| |||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||    
T  29992028 gatcttgcttgctagaggcaaagctgtcgacaaccttctttgagtcaagttcaaagtctattggttctaacctcaagtcatgaacccattgaagagctga 29991929  T
Q  216 taacaaacccaacgcttctccaatatgcacctcatgcttgtgctcaaa 263  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29991928 taacaaacccaacgcttctccaatatgcacctcatccttgtgctcaaa 29991881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 22849564 - 22849506
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  22849564 acctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaa 22849506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26370507 - 26370449
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||| ||||| |||||||||||| | ||||||||||||||||| |||||    
T  26370507 acctcatttgcttgcctccgcacaaactcaacagtcgagttttcataatattgcctaaa 26370449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 27635189 - 27635131
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  27635189 accttatttgcttgtctccgtacaaactcaacagtcgagttttcataataatgcctaaa 27635131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 33845709 - 33845755
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  33845709 acctcatttgcttgcctccgtacaaactcaacacgagagttttcata 33845755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 19933952 - 19934036
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagc 104  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||| | ||| |||| |  | |||||| ||||| ||||||||    
T  19933952 cctcatttgcttgtctccgaacaaactctacactcgagttttcataaaaatgattaaacaaagttttacagtcattaataatagc 19934036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 26510116 - 26510164
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  26510116 cctcatttgcttgtctccgtacaaactccaccttagagttttcataata 26510164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 3981805 - 3981852
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataa 66  Q
    |||||||| ||||||||||| | |||||| ||||||||||||||||||    
T  3981805 acctcattcgcttgtctccgaataaactccacactagagttttcataa 3981852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 10944267 - 10944212
Alignment:
Q  22 tcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    ||||||||||||||| |||||||||||||  | |||||||||||||| || |||||    
T  10944267 tcatttgcttgtctctgtacaaactcaaccgtcgagttttcataataatgcctaaa 10944212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 10950136 - 10950081
Alignment:
Q  22 tcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    ||||||||||||||| |||||||||||||  | |||||||||||||| || |||||    
T  10950136 tcatttgcttgtctctgtacaaactcaaccgtcgagttttcataataatgcctaaa 10950081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 13911691 - 13911739
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    ||||||||||||||||| |||||||||| ||  |||||||||| |||||    
T  13911691 cctcatttgcttgtctctgtacaaactctaccttagagttttcttaata 13911739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 19934128 - 19934180
Alignment:
Q  193 tcatgaacccattgaagagctgataacaaacccaacgcttctccaatatgcac 245  Q
    ||||| ||||||||||||||||  ||||||||||| | ||| |||||||||||    
T  19934128 tcatgcacccattgaagagctgtcaacaaacccaatgtttcaccaatatgcac 19934180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 25585966 - 25586299
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggat----ttacattcattgataatagcaccatatttc 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||||    ||||||||||| |||||||||||||||| |    
T  25585966 acctcatttgcttgtctccgtacaaactcaacaccagagttttcataatactaactaaata-ggatttaattacattcattaataatagcaccatattcc 25586064  T
Q  115 gtataatcttgcttgtt---ggcaaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagag 211  Q
    |||||||||||||||||   ||||||||| ||||||||| |||| ||||||| ||||||||||| || | |||||  |||||||||||||||||||| ||    
T  25586065 gtataatcttgcttgttagaggcaaagctgtcgacaaccttcttcgagtcaagttcaaagtctattgatgctaac--caattcatgaacccattgaatag 25586162  T
Q  212 ctgataacaaacccaacgcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgccttcctcgtctctaataca 311  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | ||  ||| |||||||  |||||| || ||| |||||||    
T  25586163 ctgataacaaacccaacgcttctcaaatatgcacctcatgcttgtgctcaaaacattccttcttcacaagcacaaacgtgccttcttcatctataataca 25586262  T
Q  312 tatgccaatacccacttggttgtcgttgtttggaaag 348  Q
    ||  |||||| ||||| ||||||| || |||||||||    
T  25586263 tacaccaatatccactcggttgtcattatttggaaag 25586299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 5584069 - 5583844
Alignment:
Q  23 catttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatttcgtataatc 122  Q
    |||||||||||||||| |||||||| ||||| |||||||||||  | ||| |||| |  | |||||| ||||| |||||||| ||| ||| |||  ||||    
T  5584069 catttgcttgtctccgaacaaactctacactcgagttttcatagaaatgattaaacaaagttttacagtcattaataatagctccaaattccgtcgaatc 5583970  T
Q  123 ttgcttgttgg---caaagctatcgacaaccgtctttgagtcaaattcaaagtctactggtcctaacctcaattcatgaacccattgaagagctgataac 219  Q
     ||| | || |   |||||||||| || ||  | || || |||| ||| || ||||  || ||||||   || ||||| ||||||||||||||||  |||    
T  5583969 atgcctattagctccaaagctatcaaccacttttttggaatcaagttcgaactctataggccctaactgtaactcatgcacccattgaagagctgtcaac 5583870  T
Q  220 aaacccaacgcttctccaatatgcac 245  Q
    ||||| || ||||| |||||||||||    
T  5583869 aaacctaatgcttcaccaatatgcac 5583844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 20351259 - 20351301
Alignment:
Q  23 catttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||||| |||||||| ||||| |||||||||||    
T  20351259 catttgcttgtctccgaacaaactctacactcgagttttcata 20351301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 21708525 - 21708479
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||    
T  21708525 acctcatttgcttgcctccatacaaactcaacatgagagttttcata 21708479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 20174655 - 20174606
Alignment:
Q  22 tcatttgcttgtctccgtacaaactcaacactagagttttcataatattg 71  Q
    ||||||||||||||||  ||||||||||||||||| ||  ||||||||||    
T  20174655 tcatttgcttgtctcctcacaaactcaacactagaattgacataatattg 20174606  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 20351432 - 20351484
Alignment:
Q  193 tcatgaacccattgaagagctgataacaaacccaacgcttctccaatatgcac 245  Q
    ||||| ||||||||||||||||  ||||||||||| | ||| |||||||||||    
T  20351432 tcatgcacccattgaagagctgtcaacaaacccaatggttcaccaatatgcac 20351484  T

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Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 4424681 - 4424774
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaatacggatttacattcattgataatagcaccatatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4424681 acctcatttgcttgtctccgtacaaactcaacactagagtttttataatactgactaaatacggatttacattcattgataatagcaccatatt 4424774  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 10544010 - 10543961
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10544010 acctcatttgcttgtctccgtacaaactcaacagtcgagttttcataata 10543961  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 13523171 - 13523226
Alignment:
Q  22 tcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  13523171 tcatttgcttgcctccgtacaaactcaacacaagagtttacataaaattgactaaa 13523226  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 13612706 - 13612761
Alignment:
Q  22 tcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  13612706 tcatttgcttgcctccgtacaaactcaacacaagagtttccataaaattgactaaa 13612761  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 26381371 - 26381419
Alignment:
Q  20 cctcatttgcttgtctccgtacaaactcaacactagagttttcataata 68  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  26381371 cctcatttgcttgtctccgtacaaactctaccttagagttttcataata 26381419  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8871877 - 8871929
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattg 71  Q
    ||||||||||||||| |||  ||||||||||||||| ||||  ||||||||||    
T  8871877 acctcatttgcttgtatcctcacaaactcaacactaaagttaacataatattg 8871929  T

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Target: scaffold0006 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 203203 - 203261
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  203203 acctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaa 203261  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 16906794 - 16906854
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaata 79  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||  |||||||||||    
T  16906794 acctcatttgtttgtctccgtaaaaactcaacattagagttttcataaatttgactaaata 16906854  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 22069704 - 22069574
Alignment:
Q  193 tcatgaacccattgaagagctgataacaaacccaacgcttctccaatatgcacctcatgcttgtgctcaaaccattccgtttttgcaatcacaaacacgc 292  Q
    ||||| ||||| ||||| || || || ||||||||||||||||||||||| || |||  |||| | ||||||||||||||||| ||||  |||||   ||    
T  22069704 tcatgtacccaatgaagtgccgacaataaacccaacgcttctccaatatgaacatcacacttgggttcaaaccattccgttttagcaaggacaaaagtgc 22069605  T
Q  293 cttcctcgtctctaatacatatgccaatacc 323  Q
    |||| || || |||||||| || ||||||||    
T  22069604 cttcatcatccctaatacacataccaatacc 22069574  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 20491549 - 20491501
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataat 67  Q
    ||||||||||||||||||||||||||||||||| | || ||||||||||    
T  20491549 acctcatttgcttgtctccgtacaaactcaacagtcgacttttcataat 20491501  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 17092943 - 17093001
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcataatattgactaaa 77  Q
    ||||||||||| ||| | || |||||||||||| | ||||||||||||||||| |||||    
T  17092943 acctcatttgcatgttttcgcacaaactcaacatttgagttttcataatattgtctaaa 17093001  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 42311993 - 42311951
Alignment:
Q  23 catttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||||| |||||||| ||||| |||||||||||    
T  42311993 catttgcttgtctccgaacaaactctacactcgagttttcata 42311951  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 24449249 - 24449208
Alignment:
Q  25 tttgcttgtctccgtacaaactcaacactagagttttcataa 66  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  24449249 tttgcttgtctccgtacaaacccgacacttgagttttcataa 24449208  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 35537546 - 35537509
Alignment:
Q  23 catttgcttgtctccgtacaaactcaacactagagttt 60  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  35537546 catttgcttgtcttcgtacaaactcaacacttgagttt 35537509  T

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Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 11072 - 11026
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  11072 acctcatttgcttgcctccgtacaaactcaacacgagagttttcata 11026  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 5385 - 5431
Alignment:
Q  19 acctcatttgcttgtctccgtacaaactcaacactagagttttcata 65  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||    
T  5385 acctcatttgcttgcctccatacaaactcaacatgagagttttcata 5431  T

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Target: scaffold0913 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 3638 - 3590
Alignment:
Q  21 ctcatttgcttgtctccgtacaaactcaacactagagttttcataatat 69  Q
    |||||||||||||||||  ||||| ||||||||||||||  ||||||||    
T  3638 ctcatttgcttgtctcctcacaaattcaacactagagttcacataatat 3590  T

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Target: scaffold0898 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 1963 - 2011
Alignment:
Q  21 ctcatttgcttgtctccgtacaaactcaacactagagttttcataatat 69  Q
    |||||||||||||||||  ||||| ||||||||||||||  ||||||||    
T  1963 ctcatttgcttgtctcctcacaaattcaacactagagttcacataatat 2011  T

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