View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3708_high_1 (Length: 478)
Name: NF3708_high_1
Description: NF3708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3708_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Original strand, 3613674 - 3614127
Alignment:
| Q |
12 |
atgaatacagtatgcaacaacttgctgcgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatgtggtaggttctggtat |
111 |
Q |
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| T |
3613674 |
atgaatacagtatgcaacaacttgctgtgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatggggtaggttctggtat |
3613773 |
T |
|
| Q |
112 |
tatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaagagaatgttagggcttgtttagcttggaagaaagag |
211 |
Q |
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| T |
3613774 |
tatgcctcatccaacttcaagaaccttgaaagagtattgttggacggattcttttgcaaatcaagagaatgttagggcttgtttagcttgggagaaagag |
3613873 |
T |
|
| Q |
212 |
acatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataatgatc |
311 |
Q |
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| T |
3613874 |
acatgttctggaaaaccgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataatgatc |
3613973 |
T |
|
| Q |
312 |
tgaatatgaaccgtatttgtacttcatggcttaataccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaaagaagcactttg |
411 |
Q |
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| T |
3613974 |
tgaatatgaaccgtatttgtacttcatggcttaataccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaaagaagcactttg |
3614073 |
T |
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| Q |
412 |
taggattgttgcacatccatttggattagcacaaacatactggcttgcacaggt |
465 |
Q |
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| T |
3614074 |
taggattgttgcacatccatttggattagcacaaacatactggcttgcacaggt |
3614127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 465
Target Start/End: Original strand, 14757497 - 14757950
Alignment:
| Q |
12 |
atgaatacagtatgcaacaacttgctgcgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatgtggtaggttctggtat |
111 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||| |
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| T |
14757497 |
atgaatacagtatgcaacaacttgctgcgttgaatcttgttccatgcgccggctcaaaattggcagcatggacaagagcttatggggtaggttgtggtat |
14757596 |
T |
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| Q |
112 |
tatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaagagaatgttagggcttgtttagcttggaagaaagag |
211 |
Q |
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||||||||||||||||||||||| ||||||| |||| |||||| ||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| |
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| T |
14757597 |
tatgcctcatccaacttcaagaatgatgaaagagtattgctggactgattcttttgcgaagcaagagaatgttagggcttgtttagcttgggagaaggag |
14757696 |
T |
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| Q |
212 |
acatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataatgatc |
311 |
Q |
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| T |
14757697 |
atgtgttccggaaagccgacgaacatgatttgcttgaatattattggtctgtttgggctatttcacctcaataaggatcacacattctgtaataacgatc |
14757796 |
T |
|
| Q |
312 |
tgaatatgaaccgtatttgtacttcatggcttaataccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaaagaagcactttg |
411 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||| |
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| T |
14757797 |
cgattatgaatcgtatttgtacttcatggcttaataccttggattctattacaacaaagacaatgcagaatgagattcttaaacagaaagaagcactttg |
14757896 |
T |
|
| Q |
412 |
taggattgttgcacatccatttggattagcacaaacatactggcttgcacaggt |
465 |
Q |
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||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14757897 |
tagaattgctgcacatccatttggactagcacaaacatactggcttgcacaggt |
14757950 |
T |
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