View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3708_high_11 (Length: 202)
Name: NF3708_high_11
Description: NF3708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3708_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 1407505 - 1407697
Alignment:
| Q |
7 |
ctctacttcatttctctctgcgtagatacatccactttgtactacaacatagactacaaggtctgttttgttacgaataattacatggatcaacatgttg |
106 |
Q |
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| T |
1407505 |
ctctacttcatttctctctgcgtagatacatccactttgtactacaacatagactacaaggtccgtttcgttacgaataattacatggatcaacatgttg |
1407604 |
T |
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| Q |
107 |
aacatcgacacatgtgattggtacgttcaaataacttcattttctcaaattaatactagtgttgttgtgttgtatcatgtactagttcttcat |
199 |
Q |
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| T |
1407605 |
aacatcgacacatgtgattggtacattcaaataacttcattttctcaaattaatactagtgttattgtgttgtatcatgtactagttcttcat |
1407697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 1396494 - 1396616
Alignment:
| Q |
7 |
ctctacttcatttctctctgcgtagatacatccactttgtactacaacatagactacaaggtctgttttgttacgaataattacatggatcaacatgttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
1396494 |
ctctacttcatttctctctgcgtagatacatccactttgtactataacatagactacaaggtctgtttcgttacgaacaattacat-gatcaacatgttg |
1396592 |
T |
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| Q |
107 |
aacatcgacacatgtgattggtac |
130 |
Q |
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| T |
1396593 |
aacatcgacacatgtgattggtac |
1396616 |
T |
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