View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3708_low_1 (Length: 531)
Name: NF3708_low_1
Description: NF3708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3708_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 50243970 - 50243663
Alignment:
| Q |
20 |
ataagaaccaatctataaaaagcagtggtgaaaaactgttttccatctcttccagacaccaatacaatacaaaacgttaacaaaaacacgcgaaagccat |
119 |
Q |
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| T |
50243970 |
ataagaaccaatctataaaaagcagtggtgaaaaactgctttccatctcttccagacaccaatacaatacaaaacgttaacaaaaacacgcgaaagccat |
50243871 |
T |
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| Q |
120 |
attcataactcttcattgcaggatatagcttcataaaacttgcacagaaccctgcaaatccccacaacaatacaatcatatactacatgtctggtgtctg |
219 |
Q |
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| T |
50243870 |
attcataactcttcattgcaggatatagcttcataaaacttgcacagaaccctgcaaatccccacaacaatacaatcatatactacatgtctggtgtctg |
50243771 |
T |
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| Q |
220 |
actcactgcccaacactgatacatgtagttacgttcgataggtacatgctctccatttattactggtgtcaacgtgtcagtgtcttgtatgtgtcggtat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50243770 |
actcactgcccaacactgatacatgtagttacgttcaataagtacatgctctccatttattactggtgtcaacgtgtcagtgtcttgtatgtgtcagtat |
50243671 |
T |
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| Q |
320 |
ttcataca |
327 |
Q |
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|||||||| |
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| T |
50243670 |
ttcataca |
50243663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 364 - 517
Target Start/End: Complemental strand, 50243636 - 50243483
Alignment:
| Q |
364 |
gcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccac |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243636 |
gcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccac |
50243537 |
T |
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| Q |
464 |
caactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243536 |
caactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattg |
50243483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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