View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3708_low_12 (Length: 230)
Name: NF3708_low_12
Description: NF3708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3708_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 47477933 - 47478045
Alignment:
| Q |
86 |
gacaattgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
185 |
Q |
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| T |
47477933 |
gacatttgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
47478032 |
T |
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| Q |
186 |
tttgtgtttgtgt |
198 |
Q |
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| T |
47478033 |
tttgtgtttgtgt |
47478045 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 47487029 - 47487078
Alignment:
| Q |
134 |
acctgaaagccttgggttccaagtgagacatgaggaattagttcagtttg |
183 |
Q |
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| T |
47487029 |
acctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttg |
47487078 |
T |
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