View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3708_low_3 (Length: 413)
Name: NF3708_low_3
Description: NF3708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3708_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 4251812 - 4251426
Alignment:
| Q |
11 |
gatgaacaaaatttaaaaataccgagttcaattgagacgatgcataactcatatatctaatattatagtcacaagcatatctaaaaccaccataagttgc |
110 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4251812 |
gatgaacaaaatttgaaaataccaagttcaattgagacgatgcataactcatatatctaatat---agtcacaagcatatctaaaaccaccataagttgc |
4251716 |
T |
|
| Q |
111 |
attaaccaaaagtaaccatcactaacaatgtttcataaataatttgaaaatcctaatcagcagaaggnnnnnnnnncgaagaaaagcatatatagaactt |
210 |
Q |
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| T |
4251715 |
attaaccaaaagtaaccatcactagcaatgtttcataaataatttgaaaatcctaatcagcagaaggaaaaaaaaaggaagaaaagcatatatagaactt |
4251616 |
T |
|
| Q |
211 |
aattgataaactccccttaaatttgcttcaattatttatgttacccttctaaaattcaacctgcaaccacaactttgaacaaatgtcacacaaagttatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251615 |
aattgataaactccccttaaatttgcttcaattatttatgttacccttccagaattcaacctgcaaccacaactttgaacaaatgtcacacaaagttatt |
4251516 |
T |
|
| Q |
311 |
cgagctaatctttcttccactcaaagtgaaactacccactgtgatcggtaaatgattcttaaaaagtcataaaattgatgcaacaaagtt |
400 |
Q |
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| T |
4251515 |
cgagctagtcgtttttccactcaaagtgaaactacccattgtgatcgataaatgattcttaaaaagtcataaaattgatgcaacaaagtt |
4251426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 303 - 400
Target Start/End: Complemental strand, 4244883 - 4244786
Alignment:
| Q |
303 |
aagttattcgagctaatctttcttccactcaaagtgaaactacccactgtgatcggtaaatgattcttaaaaagtcataaaattgatgcaacaaagtt |
400 |
Q |
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| T |
4244883 |
aagttattcgagctagccttttttccactcaaagtaaaactacccaccgtgatctgtaaacgattattaaaaagtcataaaattgatgcaacaaagtt |
4244786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 4245238 - 4245130
Alignment:
| Q |
187 |
cgaagaaaagcatatatagaacttaattgataaactccccttaaatttgcttcaattatttatgttacccttctaaaattcaacctgcaaccacaacttt |
286 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||| ||| |||||||||| | ||||| ||| |||||||||||||| |
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| T |
4245238 |
cgaagaaaagcataaatagaactta-ttgataaactcccctaaaatttgtttcaattcttt--gttacccttccagaattcgaccagcaaccacaacttt |
4245142 |
T |
|
| Q |
287 |
gaacaaatgtca |
298 |
Q |
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|||||||||||| |
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| T |
4245141 |
gaacaaatgtca |
4245130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 4245357 - 4245252
Alignment:
| Q |
11 |
gatgaacaaaatttaaaaataccgagttcaattgagacgatgcataactcatatatctaatattatagtcacaagcatatctaaaaccaccataagttgc |
110 |
Q |
| |
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|||||| ||||||| ||| | |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | |
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| T |
4245357 |
gatgaataaaatttggaaacatcgagttcaattgagacaatgcataactcatatttctaatat---agtcacaagcatatctaaaaccaccataagtt-c |
4245262 |
T |
|
| Q |
111 |
attaaccaaa |
120 |
Q |
| |
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|||||||||| |
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| T |
4245261 |
attaaccaaa |
4245252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 14416818 - 14416855
Alignment:
| Q |
360 |
aaatgattcttaaaaagtcataaaattgatgcaacaaa |
397 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| |
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| T |
14416818 |
aaatgattcttaaaaagtcataaaatcgatgccacaaa |
14416855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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