View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3708_low_4 (Length: 376)
Name: NF3708_low_4
Description: NF3708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3708_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 30748916 - 30749262
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30748916 |
ggtagtttaccaagtaacggaagccgcacaattttgttgcaaatctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgata |
30749015 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtagattccttcttgtatct |
218 |
Q |
| |
|
|||| |||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
30749016 |
atccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatac |
30749115 |
T |
|
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
30749116 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt |
30749215 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30749216 |
tttccaccgaggtttagatcacgtaactctgtcaagctattcccttt |
30749262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 30677998 - 30677652
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30677998 |
ggtagtttaccacgtaacggaagccgcacaattttgttgcattcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgata |
30677899 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtagattccttcttgtatct |
218 |
Q |
| |
|
||| |||||| ||||||| |||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
30677898 |
atctttcatagtaatttattgtcaagcatttgagatttgagtgaggtttaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatcc |
30677799 |
T |
|
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
30677798 |
ccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttgatactcagt |
30677699 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30677698 |
tttccactgaggtttagatcacgtaactctgtcaagctattcccttt |
30677652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 30435095 - 30435441
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| || | | ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30435095 |
ggtagtttaccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaataattatccaacttggtaacgata |
30435194 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtagattccttcttgtatct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || | ||||||||| | || | |
|
|
| T |
30435195 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtaattgctcagatctaattatagattcctgttgcgatat |
30435294 |
T |
|
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
30435295 |
ccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgatactcagt |
30435394 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
30435395 |
tttccaccgaggtttagatcatgtaactctgtcaagctatttccttt |
30435441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 29871459 - 29871805
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| || | | ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29871459 |
ggtagtttaccaagtaacggaagccgcacaatcttgttgcaatcctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgata |
29871558 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtagattccttcttgtatct |
218 |
Q |
| |
|
|||| |||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| | || | |
|
|
| T |
29871559 |
atccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcctgttgcgatat |
29871658 |
T |
|
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
29871659 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcagt |
29871758 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
29871759 |
tttccaccgagttttagatcacgtaactctgtcaaactattcccttt |
29871805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 30243202 - 30242856
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
30243202 |
ggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaaggata |
30243103 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtagattccttcttgtatct |
218 |
Q |
| |
|
|||| |||||| || |||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||| | | | || | |
|
|
| T |
30243102 |
atccctcatagaaacttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaattatagattcatgttgggatat |
30243003 |
T |
|
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
30243002 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcagt |
30242903 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30242902 |
tttccaccgaggtttagatcacgtaactctgtcaagctattcccttt |
30242856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 30482677 - 30483023
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
30482677 |
ggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgata |
30482776 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtagattccttcttgtatct |
218 |
Q |
| |
|
| || |||| | ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| | | || | |
|
|
| T |
30482777 |
acccttcattgtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcaagtacttgctcagcactaattatagattcctgttgggatat |
30482876 |
T |
|
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
30482877 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcagt |
30482976 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30482977 |
tttccaccgaggtttagatcacgtaactctgtcaagctattcccttt |
30483023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 30339355 - 30339009
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| || ||| |||| | ||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
30339355 |
ggtagtttaccaagtaactgaagcagcacaattttgttgcaattccaaagattaagagaaattaaattactaagaaggcttatccaacttggtaacgata |
30339256 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtagattccttcttgtatct |
218 |
Q |
| |
|
|||| |||||| |||||| |||| | |||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||| | || | |
|
|
| T |
30339255 |
atccttcatagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttcgagcacttgctcagcactaattatagattcctgttgcgatat |
30339156 |
T |
|
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
30339155 |
ccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcagt |
30339056 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30339055 |
tttccaccgaggtttagatcacgtaactctgtcaagctattcccttt |
30339009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 30714264 - 30713906
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || || | | |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30714264 |
ggtagtttaccaagtaacggaagccgcacaattttcttgcaatggagaagtacaagagaaactaaattactaagaataattatccaacttggtaatgata |
30714165 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtag-----------attcc |
207 |
Q |
| |
|
|||| |||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| || || ||||| |
|
|
| T |
30714164 |
atccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaacaacaggggtctttggaattcc |
30714065 |
T |
|
| Q |
208 |
ttctt-gtatctccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcct |
306 |
Q |
| |
|
|| || || | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
30714064 |
ttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcct |
30713965 |
T |
|
| Q |
307 |
tggatacgcagttttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30713964 |
ttgatactcagttttccaccgaggtttagatcacgtaactctgtcaagctattcccttt |
30713906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 30059630 - 30059988
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||| ||||| | ||||| |||||||| |||||||||||||||||||||||||||||| || |||| |
|
|
| T |
30059630 |
ggtagtataccaagtaactgaagccgcacaactttcttacaacgcttaagtttaagagaaactaaattactaagaataattatccaacttggcaaggata |
30059729 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtag-----------attcc |
207 |
Q |
| |
|
|||| |||||| || |||| | |||||| ||||||||||||||||||||||| ||| |||||||||||| |||| || || ||||| |
|
|
| T |
30059730 |
atccctcatagaaacttattttcaagcagttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaacaacagggttctttggaattcc |
30059829 |
T |
|
| Q |
208 |
ttctt-gtatctccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcct |
306 |
Q |
| |
|
|| || || | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
30059830 |
ttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaacattgtttaatcct |
30059929 |
T |
|
| Q |
307 |
tggatacgcagttttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30059930 |
tggatatgcagttttccaccgaggtttagatcacgtaactctgtcaagctattcccttt |
30059988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 29852572 - 29852742
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| || ||| ||||| ||||||||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
29852572 |
ggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaacttggtaacgata |
29852671 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctca |
189 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29852672 |
atccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctca |
29852742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 30399550 - 30399696
Alignment:
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||| || ||||| |||| |||||||||| |
|
|
| T |
30399550 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt |
30399649 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30399650 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
30399696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 30399338 - 30399513
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||| ||| |||| ||||||| ||| || || ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30399338 |
ggtagtttaccaattaactgaagtcgcacaactttcttgcaattcccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgata |
30399437 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcact |
194 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
30399438 |
atccgtcatagtaatttattttcaagcacttgagatttgagtgaggttgaagcacttcgagtacttgctgagcact |
30399513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 29852784 - 29852930
Alignment:
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagt |
318 |
Q |
| |
|
||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||| ||||| ||| |
|
|
| T |
29852784 |
ccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttgatactcagc |
29852883 |
T |
|
| Q |
319 |
tttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
29852884 |
tttccaccaaggtttagatcacataactctgtcaagctattcccttt |
29852930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 81 - 359
Target Start/End: Complemental strand, 17418937 - 17418647
Alignment:
| Q |
81 |
taaattactaagaataattatccaacttggtaatgataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagt |
180 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| ||| |||||| || |||| | ||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
17418937 |
taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt |
17418838 |
T |
|
| Q |
181 |
acttgctcagcactgaccgtag------------attccttcttgtatctccatgacaagcataattgatgaaggtcttttttacccatcaaattagccg |
268 |
Q |
| |
|
| |||||||||||| || ||| |||| | ||| | |||| ||||||||||||| || |||||||||||||| ||||| ||||| |
|
|
| T |
17418837 |
agttgctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtcttttttacctatcaacttagctt |
17418738 |
T |
|
| Q |
269 |
cttcagcttcagataaactaccaacattgtttaatccttggatacgcagttttccaccgaggtttagatcacgtaactctgacaagctatt |
359 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||| |||| ||||| || ||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
17418737 |
cttgagcttcagataaattaccaacatcttttaagcctttgatactcaattttccaccgaggtttagatcacctaactctaccaagctatt |
17418647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 365
Target Start/End: Original strand, 30206020 - 30206144
Alignment:
| Q |
241 |
aggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcagttttccaccgaggtttagatcac |
340 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||||||||||| ||||| ||||| |||| ||||| |||||||| || ||||||||||| |
|
|
| T |
30206020 |
aggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgatacttagttttcctcccaggtttagatcgt |
30206119 |
T |
|
| Q |
341 |
gtaactctgacaagctattcccttt |
365 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
30206120 |
gtaactctgccaagctattcccttt |
30206144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 30205787 - 30205938
Alignment:
| Q |
20 |
gtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgataa |
119 |
Q |
| |
|
|||||||||||| | | |||||||||||| ||| | ||| ||| ||||| ||||| || ||||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
30205787 |
gtagtttaccaaatgacggaagccgcacacatttctcacaattccaaagtacaagagcaactaaattactgagaatacttatccaacttggtaagaataa |
30205886 |
T |
|
| Q |
120 |
tccgtcatag---caatttatatccaagcacttgagatttgagtgaggttgaagc |
171 |
Q |
| |
|
|| || |||| ||| |||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
30205887 |
tctgttatagtgacaaattat---caacctcttgagatttgagtgaggttgaagc |
30205938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 30474742 - 30474818
Alignment:
| Q |
116 |
ataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagca |
192 |
Q |
| |
|
|||||||||||||| || ||| | ||| | ||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
30474742 |
ataatccgtcatagtaaagtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttgctcagca |
30474818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 17982400 - 17982470
Alignment:
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactac |
289 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| || ||||| || ||||| ||||||||||||||| |
|
|
| T |
17982400 |
ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactac |
17982470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 30522362 - 30522309
Alignment:
| Q |
118 |
aatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagc |
171 |
Q |
| |
|
||||||||||||| || ||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
30522362 |
aatccgtcatagccatgtattttcaagatcttgagatttgagtgaggttgaagc |
30522309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 30562702 - 30562649
Alignment:
| Q |
118 |
aatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagc |
171 |
Q |
| |
|
||||||||||||| || ||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
30562702 |
aatccgtcatagccatgtattttcaagatcttgagatttgagtgaggttgaagc |
30562649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 20297433 - 20297075
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||| ||| || ||| ||||| || ||||| ||||||||||||||||||||||||||||||||| | | |
|
|
| T |
20297433 |
ggtagtttaccaattaacggaagctgcacaatttcgttgcaattctcaagttcaaaagaaactaaattactaagaataattatccaacttggtaaccaca |
20297334 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgac------------cgtagattc |
206 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| || ||| ||| |
|
|
| T |
20297333 |
atccatcatagcaatttatttccaagcacttgagatttgactgaggttgaagcacttcgagtactttctcagcacttacagttggtggcttggtaaattt |
20297234 |
T |
|
| Q |
207 |
cttcttgtatctccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcct |
306 |
Q |
| |
|
| ||| | ||| ||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||||| ||| ||||||| ||||| ||| |
|
|
| T |
20297233 |
atcattgctttcccaagacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcct |
20297134 |
T |
|
| Q |
307 |
tggatacgcagttttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
| ||||| |||||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20297133 |
ttgatactcagttttccaccaagttttagatcacgtaactctgtcaagctattcccttt |
20297075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 26706605 - 26706963
Alignment:
| Q |
19 |
ggtagtttaccaagtaatggaagccgcacaattttgttacatttcaaaagttgaagagaaattaaattactaagaataattatccaacttggtaatgata |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| || || | | ||||| |||||||| |||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
26706605 |
ggtagtttaccaagtaacggaagccgcacaaatttcttgcaatccccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgata |
26706704 |
T |
|
| Q |
119 |
atccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctctttgagtacttgctcagcactgaccgtag-----------attcc |
207 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| | || | | ||| |
|
|
| T |
26706705 |
atccgtcgtagtactttatttccaagcacttgagatttgagtgaggttgaagcactttgagtagctgctcaacactaatagttggtggcttggtaaatcc |
26706804 |
T |
|
| Q |
208 |
ttc-ttgtatctccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcct |
306 |
Q |
| |
|
|| |||| | ||||||||||||||||| | |||| |||||| ||||||||||| || ||| ||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
26706805 |
atcattgttttcccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagcct |
26706904 |
T |
|
| Q |
307 |
tggatacgcagttttccaccgaggtttagatcacgtaactctgacaagctattcccttt |
365 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26706905 |
tcgatactcagttttccaccgaggtttagatcacgtaactctgtcaagctattcccttt |
26706963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 358
Target Start/End: Original strand, 7098896 - 7099036
Alignment:
| Q |
218 |
tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatccttggatacgcag |
317 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| ||||| || ||| |||||||||||||||||||||||| | ||| |||| ||| ||| |
|
|
| T |
7098896 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag |
7098995 |
T |
|
| Q |
318 |
ttttccaccgaggtttagatcacgtaactctgacaagctat |
358 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |
|
|
| T |
7098996 |
ctttcctcctaaatttagatcacgtaactctgctaagctat |
7099036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 7582349 - 7582272
Alignment:
| Q |
219 |
ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacatt |
296 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| || || ||| |||||||||||||||||| ||||| |
|
|
| T |
7582349 |
ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatt |
7582272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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