View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3708_low_7 (Length: 284)
Name: NF3708_low_7
Description: NF3708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3708_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 30044118 - 30043851
Alignment:
| Q |
1 |
ggatgctctaatggttttgttaagtacaatgaaaatattcatttagcaattgatattttatgttttaactcattgttagggattaacaaaatcttgcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30044118 |
ggatgctctaatggttttgttaagtacaatgaaaatattcatttagtaattgatattttatgttttaactcattgttagggattaacaaaatcttgcaag |
30044019 |
T |
|
| Q |
101 |
aaagtcagtaaagcacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactcaaaaagattttgtagacatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30044018 |
aaagtcagtaaagcacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactcaaaaagattttgtagacatac |
30043919 |
T |
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| Q |
201 |
ttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaac |
268 |
Q |
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| T |
30043918 |
ttctttcaattatgcaccaaaccattgatattgagggtgaacaaaatctcgtcattgatcgaactaac |
30043851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 29995092 - 29995358
Alignment:
| Q |
4 |
tgctctaatggttttgttaagtacaatgaaaatattcatttagcaattgatattttatgttttaactcattgttagggattaacaaaatcttgcaagaaa |
103 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29995092 |
tgctctaatgattttgttaagtacaatgaaaatatttatttagtaattgatattttatgttt-aactcattgttagggattaacaaaatcttgcaagaaa |
29995190 |
T |
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| Q |
104 |
gtcagtaaagcacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaac---tcaaaaagattttgtagacatac |
200 |
Q |
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|| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
29995191 |
gttagtaaagcaattgatgagcagctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactcatcataaagattttgtagacatac |
29995290 |
T |
|
| Q |
201 |
ttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaac |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
29995291 |
ttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgatcgaactaac |
29995358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 30068622 - 30068369
Alignment:
| Q |
3 |
atgctctaatggttttgttaagtacaatgaaaatattcatttagcaattgatattttatgttttaactcattgttagggattaacaaaatcttgcaagaa |
102 |
Q |
| |
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|||||||||||||| ||||||||||| ||| |||||| || || ||||||||||||| |||| ||||| |||||||||||||||| ||||||| |||| |
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| T |
30068622 |
atgctctaatggttctgttaagtacactgagaatattgatgtaataattgatattttaagttt-aactctttgttagggattaacacgatcttgccagaa |
30068524 |
T |
|
| Q |
103 |
agtcagtaaagcacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactcaa---aaagattttgtagacata |
199 |
Q |
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| T |
30068523 |
actcagtaaagaaattgatgaggtgctagaggtgatt--------------acaagctgctaatgtaaacaaaactcatcataaagatttcgtagacata |
30068438 |
T |
|
| Q |
200 |
cttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaac |
268 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||| ||||| |
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| T |
30068437 |
cttctttcaattatgcatcaaaccattgatgtcgagggtgaacaaaatctcgtaattgatcgatctaac |
30068369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 73 - 268
Target Start/End: Original strand, 30006949 - 30007147
Alignment:
| Q |
73 |
ttgttagggattaacaaaatcttgcaagaaagtcagtaaagcacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaac |
172 |
Q |
| |
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|||||||||||||||| | ||||||| ||| ||||||||| || |||||||| | ||| ||||| ||||||| || ||||| || ||||| || |
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| T |
30006949 |
ttgttagggattaacacgagcttgcaaaaaaaccagtaaagccctcgatgaggttttggagatgataataacagagcacgaacagactactaatactgac |
30007048 |
T |
|
| Q |
173 |
aaaactcaaaa---agattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaac |
268 |
Q |
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||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
30007049 |
aaaactcgtaatgaagactttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgatcgaactaac |
30007147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 30000784 - 30001027
Alignment:
| Q |
16 |
tttgttaagtacaatgaaaatattcatttagcaattgatattttatgttttaactcattgttagggattaacaaaatcttgcaagaaagtcagtaaagca |
115 |
Q |
| |
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|||||||||| |||||||||||||||| ||| || ||||||| | ||| |||| ||| |||||||||||| || ||||||| ||| ||||||||| |
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| T |
30000784 |
tttgttaagttcaatgaaaatattcatgtagtaactgatattattagtt--aactttttgatagggattaacacaagcttgcaaaaaaaccagtaaagct |
30000881 |
T |
|
| Q |
116 |
cttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactcaaaaagattttgtagacatacttctttcaattatgc |
215 |
Q |
| |
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|||||||| || | ||| ||||| ||||||| ||||||||| || ||||| | || | || |||||||||||||||| | ||||||||||||||| |
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| T |
30000882 |
cttgatgaagttttggagatgataataacagagcatgaacaaactactaatacagacgatcct---aaagattttgtagacacagttctttcaattatgc |
30000978 |
T |
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| Q |
216 |
accaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaac |
264 |
Q |
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|||||||||||||||| ||||||| ||| || |||||||||||||||| |
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| T |
30000979 |
accaaaccattgatgttgagggtggacaagatctcgtcattgatcgaac |
30001027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 29946441 - 29946595
Alignment:
| Q |
74 |
tgttagggattaacaaaatcttgcaagaaagtcagtaaagcacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaaca |
173 |
Q |
| |
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||||||||||||||| | | ||||||||| |||||| |||||||||||||||| || |||||| ||||||| ||||||||| | |||||||| ||| |
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| T |
29946441 |
tgttagggattaacacgagcctgcaagaaaacaagtaaatcacttgatgaggtgctggaagtgataataacagagcatgaacaaacaactaatgtagaca |
29946540 |
T |
|
| Q |
174 |
aaactcaaaa---agattttgtagacatacttctttcaattatgcaccaaaccat |
225 |
Q |
| |
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||||||| | ||| || ||||||||||| || ||||||| | |||||||||| |
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| T |
29946541 |
aaactcatcatgaagacttcgtagacatactactctcaattaagaaccaaaccat |
29946595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 29953436 - 29953560
Alignment:
| Q |
108 |
gtaaagcacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactc---aaaaagattttgtagacatacttct |
204 |
Q |
| |
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|||||||| ||||||||||| | || || || |||||||| ||||||||| | |||||||| |||||| || | |||| ||||| ||||||||||| |
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| T |
29953436 |
gtaaagcaattgatgaggtgttggaagttattttaacagagcatgaacaaaccactaatgtagacaaaaatcgccatgaagactttgttgacatacttct |
29953535 |
T |
|
| Q |
205 |
ttcaattatgcaccaaaccattgat |
229 |
Q |
| |
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| || |||||||||||||||||||| |
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| T |
29953536 |
tacatttatgcaccaaaccattgat |
29953560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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