View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3709_high_1 (Length: 1041)

Name: NF3709_high_1
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3709_high_1
NF3709_high_1
[»] chr1 (2 HSPs)
chr1 (18-951)||(49133893-49134813)
chr1 (961-1041)||(49133783-49133863)


Alignment Details
Target: chr1 (Bit Score: 746; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 18 - 951
Target Start/End: Complemental strand, 49134813 - 49133893
Alignment:
Q  18 actcataatgtgcacaattgaagtggtggtgtgttgnnnnnnncaacagcaaattgaaaattttaatggagagatagaataagtacaagtggcagtagat 117  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49134813 actcataatgtgcacaattgaagtggtggtgtgttgtttttttcaacagcaaattgaaaattttaatggagagatagaataagtacaagtggtagtagat 49134714  T
Q  118 cccaacctaaaaatgaattacaagtaataatgaaaaccatgacatacacaaaaagaatcaccttaacactacaaaaatgatcatgaattctatttataat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49134713 cccaacctaaaaatgaattacaagtaataatgaaaaccatgacatacacaaaaagaatcacctcaacactacaaaaatgatcatgaattctatttataat 49134614  T
Q  218 aaatataaggtggactaaaatgtctattcaagaaccaactttaagataacattttaatgtcgtctacgatttccatcacctttggagttttatcagannn 317  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  49134613 aaatataaggtggaccaaaatgtctattcaagaaccaactttaagataacattttaatgtcgtctacgatttccatcacctttggagttttatcagattt 49134514  T
Q  318 nnnnngttcattcctcgccttccaaactagccaaagaaccaaagtgccaaattaatacataaaaaatatcaccttccacactgaagtgtttatatggtgt 417  Q
         |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  49134513 tttttgttcattcctcgccttccaaactagccaaaaaaccaaagtgccaaattaatacacaaaaaaaatcaccttccacactgaagtgtttatatggtgt 49134414  T
Q  418 tcaatataatttgtcatcattacatcaaagagatccaccaaatgtcatgatacgtcatct-acaccgaatttccattttcttccccttccccagcctctc 516  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  49134413 tcaatataatttgtcatcat-acatcaaagagatccaccaaatgtcatgataagtcatcttacaccgaatttccattttcttccccttccccagcctctc 49134315  T
Q  517 cctcgtccttcacctcaacaacactgctcctttctgttgagagcagctcaatgcttcttatctcattccttcctcaaccccacttcttaatttctctctt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49134314 cctcgtccttcacctcaacaacactgctcctttctgttgagagcagctcaatgcttcttatctcattccttcctcaaccccacttcttaatttctctctt 49134215  T
Q  617 tgcttctcttttagcttcgnnnnnnncttccataaactgatgaagtaactgtgttctaatgca-tttttattcttttgtgcaaatgattgtttcaaagct 715  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  49134214 tgcttctcttttagcttcgtttttttcttccataaactgatgaagtaactgtgttctaaggcattttttattcttttgtgcaaatgattgtttcaaagct 49134115  T
Q  716 ctttttcgtttttgctgatttgattgctaactgttggcaattttaagaagcaccgttgnnnnnnntaggaaccagtattagtaatactgtattactaagt 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||              ||||||||||||    
T  49134114 ctttttcgtttttgctgatttgattgctaactgttggcaattttaagaagcaccgttgaaaaaaataggaacca--------------gtattactaagt 49134029  T
Q  816 cacactaagataaaaagaaaggcctgactaccaagtcacactaagctacaaagaaaggcatgattttgcatgctgtatgtgataattattctttcatggt 915  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49134028 cacactaagataaaaagaaaggcctgactaccaagtcacactaagctacaaagaaaggcatgattttgcatgctgtatgtgataattattctttcatggt 49133929  T
Q  916 tattcgattatctaaacggcttagaccatctttagt 951  Q
    ||||||||||||||||||||||||||||||||||||    
T  49133928 tattcgattatctaaacggcttagaccatctttagt 49133893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 961 - 1041
Target Start/End: Complemental strand, 49133863 - 49133783
Alignment:
Q  961 cgaagaccatctatgtcctccacacaaaccatatcctccgtgccatctttctcagactctcttgccatcaacgttttaatc 1041  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133863 cgaagatcatctatgtcctccacacaaaccatatcctccgtgccatctttctcagactctcttgccatcaacgttttaatc 49133783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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