View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3709_high_12 (Length: 285)
Name: NF3709_high_12
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_12 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6364814 - 6365098
Alignment:
| Q |
1 |
tcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataatcctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6364814 |
tcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaatt |
6364913 |
T |
|
| Q |
101 |
caatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttttcagatacgttttctctccgactttgcctttaccggtttttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
6364914 |
caatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttgccagatacgttttctctcccactttgccttttccggtttttcc |
6365013 |
T |
|
| Q |
201 |
tatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgtttt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365014 |
tatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgtttt |
6365098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6354059 - 6354203
Alignment:
| Q |
1 |
tcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataatcctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaatt |
100 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| ||||| | ||| || || ||||||||||| ||| ||||||||| | ||||||||||||| | |
|
|
| T |
6354059 |
tcttcaagtgtcaaactcacaaggaagaattcacc---ttgcataaaattatcgatgtaaaaagctccgggaattcccatgttactgtcccattcaaaat |
6354155 |
T |
|
| Q |
101 |
caatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
148 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
6354156 |
gaatactgaaagcattttgtttgtctcccaatgttggtatggaggtaa |
6354203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 7461069 - 7461213
Alignment:
| Q |
1 |
tcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataatcctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaatt |
100 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| ||||| ||| | ||||||||||||||||||||| |||||||| | ||||||||| ||| | |
|
|
| T |
7461069 |
tcttcaagtgtcaaactcacaaggaagaattcacc---ttgcatatagttatcaatataaaaagctcctggaattcccatggtactgtcccattgaaaat |
7461165 |
T |
|
| Q |
101 |
caatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
148 |
Q |
| |
|
||||||||||||| ||| || || ||||||||||| | |||||||| |
|
|
| T |
7461166 |
gaatactgaaagcagattgcttgtcccccaatgttgggagggaggtaa |
7461213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 6425651 - 6425754
Alignment:
| Q |
51 |
ctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaata |
150 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||| || |||||||||| | || |||| |||||||||| || ||||| |||||||| | |||||||||| |
|
|
| T |
6425651 |
ctcaatatagaatgctcctggaattcccatgtcactgccccattcaaaatgaacactgtaagcattttgcttgtctcctaatgttggtatggaggtaata |
6425750 |
T |
|
| Q |
151 |
acac |
154 |
Q |
| |
|
|||| |
|
|
| T |
6425751 |
acac |
6425754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 6265663 - 6265711
Alignment:
| Q |
92 |
attcaaattcaatactgaaagcattttgtttatctcccaatgttggcaa |
140 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6265663 |
attcaaattcaatgctgaaagctgtttgtttatctcccaatgttggcaa |
6265711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 6392592 - 6392665
Alignment:
| Q |
61 |
aaagctcctggagttcccatgtcattg---tcccattcaaattcaatactgaaagcattttgtttatctcccaa |
131 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||||| | ||||||||||||||||||| | |||||||| |
|
|
| T |
6392592 |
aaagctcctggaattcccatgtgattgggatcccattcaaaatgaatactgaaagcattttgtatgtctcccaa |
6392665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 6411732 - 6411805
Alignment:
| Q |
61 |
aaagctcctggagttcccatgtcattg---tcccattcaaattcaatactgaaagcattttgtttatctcccaa |
131 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||||| | ||||||||||||||||||| | |||||||| |
|
|
| T |
6411732 |
aaagctcctggaattcccatgtgattgggatcccattcaaaatgaatactgaaagcattttgtatgtctcccaa |
6411805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 6333549 - 6333595
Alignment:
| Q |
52 |
tcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
98 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
6333549 |
tcaatataaaatgctcctggaattcccatctcactgtcccattcaaa |
6333595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University