View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_high_15 (Length: 276)
Name: NF3709_high_15
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23694647 - 23694916
Alignment:
| Q |
1 |
aaattcaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgtagttcaattttagcaaaggatgtgtt |
100 |
Q |
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| T |
23694647 |
aaattcaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgtagttcaattttaccaaaggatgtgtt |
23694746 |
T |
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| Q |
101 |
tgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694747 |
tgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaa |
23694846 |
T |
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| Q |
201 |
aagggaattgtgactgcttcggaatgtccacgttgtcatagattgttctgtgcacaatgtgaggtttcat |
270 |
Q |
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| T |
23694847 |
aagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttcat |
23694916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 270
Target Start/End: Complemental strand, 23701149 - 23700885
Alignment:
| Q |
6 |
caagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgtagttcaattttagcaaaggatgtgtttgata |
105 |
Q |
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| T |
23701149 |
caagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgttgttcaattttaccaaaggatgtgtttgata |
23701050 |
T |
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| Q |
106 |
gatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaaggg |
205 |
Q |
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| T |
23701049 |
gatgggaaaattcactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaaggg |
23700950 |
T |
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| Q |
206 |
aattgtgactgcttcggaatgtccacgttgtcatagattgttctgtgcacaatgtgaggtttcat |
270 |
Q |
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| T |
23700949 |
aattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttcat |
23700885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23696778 - 23697047
Alignment:
| Q |
1 |
aaattcaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgtagttcaattttagcaaaggatgtgtt |
100 |
Q |
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|||||||||||| |||| ||||||||||||||||| ||||||| ||||||| ||| |||||||||||| ||||||| | || || ||||||||||||| |
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| T |
23696778 |
aaattcaagagaatatagcaatggtaaaatgtccttatccaaattgcaatggtatattggagcctcataattgtagcacccttataccaaaggatgtgtt |
23696877 |
T |
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| Q |
101 |
tgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaa |
200 |
Q |
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||| ||||||| ||| ||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23696878 |
tgagagatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattgtactgtccttttaatgattgttcagctatgttggtgaatgatgaa |
23696977 |
T |
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| Q |
201 |
aagggaattgtgactgcttcggaatgtccacgttgtcatagattgttctgtgcacaatgtgaggtttcat |
270 |
Q |
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| T |
23696978 |
gaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaatgtaaggtttcat |
23697047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 8149270 - 8149038
Alignment:
| Q |
25 |
taaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttg |
124 |
Q |
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||||||||||||||||||| |||||| || ||| || |||| | |||| ||||||| || ||||||||||||| || ||||||| | ||||||| |
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| T |
8149270 |
taaaatgtcctgatccaaattgcaatagtaattttgacactcaacaatgtatttcaattataccaaaggatgtgttcgaaagatggggagatgcactagt |
8149171 |
T |
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| Q |
125 |
tgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaa |
224 |
Q |
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| T |
8149170 |
tga---ttcgatgttcggatcaaagaaaatttattgtccttttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaattacggaa |
8149074 |
T |
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| Q |
225 |
tgtccacgttgtcatagattgttctgtgcacaatgt |
260 |
Q |
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||||||| |||||||||| | ||||| ||||||||| |
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| T |
8149073 |
tgtccacattgtcatagactattctgcgcacaatgt |
8149038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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