View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3709_high_18 (Length: 255)
Name: NF3709_high_18
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_18 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0158 (2 HSPs) |
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| [»] scaffold0035 (2 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 186458 - 186283
Alignment:
| Q |
70 |
tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaactgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactc |
169 |
Q |
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| T |
186458 |
tgaaataaaacagtacgattgtatcaaactgtgaatgaaaaggaaactgaaacttaggattacaatcggctatgaatttctaatgcttgtctaaaagctt |
186359 |
T |
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| Q |
170 |
ttcttccccagcttttcctttctggacctatttataggccaagcttctttaacaacgtgttctggccgtgtctctgc |
246 |
Q |
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| T |
186358 |
ctc-tcctcagctcttcctctctggacctatttataggccaagcttctttaacaacgtgttctgatcgtgcctctgc |
186283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 36351 - 36507
Alignment:
| Q |
70 |
tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaactgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactc |
169 |
Q |
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| T |
36351 |
tgaaataaaacagtacgattgtatcgtactgtgaatgaaaaggaaactgaaacttaggattacaatcagttatgaatttctaatgcttgcctaaaaactt |
36450 |
T |
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| Q |
170 |
ttcttccccagcttttcctttctggacctatttataggccaagcttctttaacaacgt |
227 |
Q |
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| T |
36451 |
ctc-tccgcagctcttcctctctggacctatttataggccaagcttcttttacaacgt |
36507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 28629 - 28769
Alignment:
| Q |
70 |
tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaactgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactc |
169 |
Q |
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| T |
28629 |
tgaaataaaacagtacgattgtat-aaactgtaaatgaaaaggaaactgaaacttaggattacaatcagttatgcatttctaaagcttgcctaaaaactt |
28727 |
T |
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| Q |
170 |
ttcttccccagcttttcctttctggacctatttataggccaag |
212 |
Q |
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| T |
28728 |
ctc-tccgcagctcttcctctctggacctatttataggccaag |
28769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 97509 - 97681
Alignment:
| Q |
70 |
tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaac--tgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaac |
167 |
Q |
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| T |
97509 |
tgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaatttctaatgcttgcctaaaaa- |
97607 |
T |
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| Q |
168 |
tcttcttcccc---agcttttcctttctggacctatttataggccaagcttctttaacaacgtgttctggccgtg |
239 |
Q |
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| T |
97608 |
-cttctcccccttttcctttccttttctagacctatttataggccaagctttcttaaaaacgtgttctggtcgtg |
97681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 87816 - 87916
Alignment:
| Q |
70 |
tgaaatgaaacagtacgattgtatcaaactgtgagtgaaaaggaaa--ctgaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaac |
167 |
Q |
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| T |
87816 |
tgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaatttctaatgtttgcctaaaaac |
87915 |
T |
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| Q |
168 |
t |
168 |
Q |
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| T |
87916 |
t |
87916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 18477700 - 18477837
Alignment:
| Q |
105 |
tgaaaaggaaact-gaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaactcttcttccc--cagcttttcctttctggacctatt |
201 |
Q |
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||||||||||||| |||||||| | ||||||| || | ||||||||||||||||||||||||| ||||| || | |||| | |||| ||||||| |
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| T |
18477700 |
tgaaaaggaaacttgaaacttaggattacaataagctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacctatt |
18477799 |
T |
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| Q |
202 |
tataggccaagcttctttaacaacgtgttctggccgtg |
239 |
Q |
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| T |
18477800 |
tataggccaagcttcgtaaaaaacgtgttctggtcgtg |
18477837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 18487796 - 18487858
Alignment:
| Q |
105 |
tgaaaaggaaact-gaaacttacggttacaatcagttgtgaatttctaatgcttgcctaaaaa |
166 |
Q |
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| T |
18487796 |
tgaaaaggaaacttgaaacttaggattacaatatgctatgaatttctaatgcttgcctaaaaa |
18487858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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