View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3709_high_26 (Length: 237)
Name: NF3709_high_26
Description: NF3709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3709_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 278453 - 278232
Alignment:
| Q |
1 |
gctcctagatctttttcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcgggcctgcaaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
278453 |
gctcctagatctttttcctgaattttctgtgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcgggcctgcaaattt |
278354 |
T |
|
| Q |
101 |
ttgctagctagaacttgttcatcagattgtgttgtacatggagtgaatttggaataatctatggaaagacccatggaaatatagtcaaaagtggttactg |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
278353 |
ttgttagctagaacttgttcatcagattgtgttgtacatggagtgaatttggaataatctatggaaagacccatggaaatatagtcaaaagtggttactg |
278254 |
T |
|
| Q |
201 |
gattgttgttgaagcaacttgt |
222 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
278253 |
gattgttgttgaaacaacttgt |
278232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 41800221 - 41800363
Alignment:
| Q |
12 |
tttttcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcgggcctgcaaatttttgctagctag |
111 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||| |
|
|
| T |
41800221 |
tttttcctgaattttctgtgcttcttgttttatcttcttctagttcagaaactagtatttcacgttcc---ttttgggcctgcaaattcttggcagctag |
41800317 |
T |
|
| Q |
112 |
aacttg--ttcatcagattgtgttgtacatggagtgaatttggaat |
155 |
Q |
| |
|
|||||| || || | || |||||| |||||||||||||||||| |
|
|
| T |
41800318 |
aacttgctctcgtcgggttcggttgtatatggagtgaatttggaat |
41800363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24685400 - 24685478
Alignment:
| Q |
1 |
gctcctagatctttttcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcacgttcc |
79 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||| |||||||||| ||| |||| ||||||||||||| ||| ||||| |
|
|
| T |
24685400 |
gctcctaggtctttttcctgaattctctctgcttctggttttatcatctcgtggtccagaaactagtatgtcatgttcc |
24685478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University